SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148769

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene148769
ATTTCTATATGCTTATGATGGAAGACGAATGCGGAAGTGGAACAAAGAGTCCCAACCTTATGGGCAGTTATGGGTTGTTGGAGATGTTATAGGATGCTGCATTAATTTGGATGCTAGTGAAATTTCATTTTACAGAAATGGTATTCCTTTGGGTGTAGCTTTCGATGGAGTAAGGAAGTTCGACTCCGATTTTGGATATTTCCCTGCAATTTCCTTGTCTCAAGGTGAACGCTGTGATTT

Ace file of the UniGene sp_v3.0_unigene148769

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRQ3_RICCO	-	-	3.0e-28	71%
FL-Next	sp=E3 ubiquitin-protein ligase RKP; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%

Source	Gene names
Sma3	At2g22020; CHLREDRAFT_176296; GSVIVT00019405001; MICPUCDRAFT_57960; MICPUN_59463; OJ1339_F05.132; OsI_26948; OsJ_25203; PHYPADRAFT_10281; PHYPADRAFT_113448; PHYPADRAFT_70590; POPTRDRAFT_207672; POPTRDRAFT_217827; RCOM_0666070; VITISV_022486;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G22010.2	-	9.0e-35	70%
RefSeq	Arabidopsis thaliana	NP_850020.1	ubiquitination-promoting complex protein 1 [Arabidopsis thaliana]	1.0e-34	70%
RefSeq	Populus trichocarpa	XP_002310019.1	predicted protein, partial [Populus trichocarpa]	6.0e-35	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIZ8

Fln msg: Distance to subject end: 1018 aas, your sequence is shorter than subject: 79 - 1280

Fln protein: FLYAYDGRRMRKWNKESQPYGQLWVVGDVIGCCINLDASEISFYRNGIPLGVAFDGVRKFDSDFGYFPAISLSQGERCD

Protein Length: 80

Fln nts: ATTTCTATATGCTTATGATGGAAGACGAATGCGGAAGTGGAACAAAGAGTCCCAACCTTATGGGCAGTTATGGGTTGTTGGAGATGTTATAGGATGCTGCATTAATTTGGATGCTAGTGAAATTTCATTTTACAGAAATGGTATTCCTTTGGGTGTAGCTTTCGATGGAGTAAGGAAGTTCGACTCCGATTTTGGATATTTCCCTGCAATTTCCTTGTCTCAAGGTGAACGCTGTGATTT

Fln Alignment:

HLKU4M001BYDPC___YAYDGRRMRKWNKESQPYGQLWVVGDVIGCCINLDASEISFYRNGIPLGVAFDGVRKFDSDFGYFPAISLSQGERCD
Q9SIZ8________________YAFDGRRVSKWNKEAEPYGQSWVAGDVIGCCIDLNCDEIYFYRNGVSLGAAFTGIRKLGPGFGYYPAISLSQGERCE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain