SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148678

Length: 388 nt

UniGene Fasta

>sp_v3.0_unigene148678
GGTACTTGTTGAAAGAATACTGGCAATGCTCTCTGATGAAGAAGGGTCTAAGTTACATCGAATGGGAAACAAAAATCTCATTGGGAGGGATGAGGTGGCAAAGATTATAGATGATATTTACAGGAAAATGCATGGACCTGGCGCTTCTGATTTAGCATCAAAAAGTCGAAATGGCCCAAGTGTTAATGCTATCGTACGTTCGGATGTAATTGGGGATTCTGTTATACCTGAATCAAAGACGTGTTGTCCATGTGGAAGCTCAATGGACAGTGACACAATGATTCAATGTGATGAAGCCAAATGTGGAGTTTGGCAACATGTAAGATGTGTGATTGTTCCAGAAAAGCCAGTTGAAAGTGTTCCACCAGAGATTCCCGTTCAATTTTAC

Ace file of the UniGene sp_v3.0_unigene148678

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref\|NP_001119465.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97324.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97328.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana]	-	-	9.0e-21	45%
FL-Next	Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1	-	-	0.0	45%

Source	Gene names
Sma3	GSVIVT00024500001; RCOM_1400310;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Zinc finger, MIZ-type	IPR004181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60410.2	-	2.0e-25	45%
RefSeq	Arabidopsis thaliana	NP_001032108.1	E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana]	3.0e-25	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q680Q4-2

Fln msg: Distance to subject end: 670 aas, your sequence is shorter than subject: 129 - 832

Fln protein: VLVERILAMLSDEEGSKLHRMGNKNLIGRDEVAKIIDDIYRKMHGPGASDLASKSRNGPSVNAIVRSDVIGDSVIPESKTCCPCGSSMDSDTMIQCDEAKCGVWQHVRCVIVPEKPVESVPPEIPVQFY

Protein Length: 130

Fln nts: GGTACTTGTTGAAAGAATACTGGCAATGCTCTCTGATGAAGAAGGGTCTAAGTTACATCGAATGGGAAACAAAAATCTCATTGGGAGGGATGAGGTGGCAAAGATTATAGATGATATTTACAGGAAAATGCATGGACCTGGCGCTTCTGATTTAGCATCAAAAAGTCGAAATGGCCCAAGTGTTAATGCTATCGTACGTTCGGATGTAATTGGGGATTCTGTTATACCTGAATCAAAGACGTGTTGTCCATGTGGAAGCTCAATGGACAGTGACACAATGATTCAATGTGATGAAGCCAAATGTGGAGTTTGGCAACATGTAAGATGTGTGATTGTTCCAGAAAAGCCAGTTGAAAGTGTTCCACCAGAGATTCCCGTTCAATTTTAC

Fln Alignment:

HLKU4M001BYH3I___LVERILAMLSDEEGSKLHRMGNKNLIGRDEVAKIIDDIYRKMHGPGASDLASKSRNGPSVNAIVRSDVIGDSVIPESKTCCPCGSSMDSDTMIQCDEAKCGVWQHVRC
Q680Q4-2______________LVDRILTLLSDEQAARL--LSKKNTVAKEAVAKLVDDTYRKMQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain