SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148603

Length: 378 nt

UniGene Fasta

>sp_v3.0_unigene148603
CCAGATTTTTATACCTGGTATAAATTATTTGCCTGTTGCCAAATGGATTTATTATGTTTTCAACTTGGCTGCAGACATGGATAACATGGGATTCATTCAGTTTAATCATTCTGTTATAATGTACAACAAGACCATAATCAACTTCAGCATACTTGAAGCTGCTCGAGGCGATGTGTTAAAAGGTGAGACTTCTATTTGTTTCAGTACTTGGGCTTGTATTGTCTGTTATCTTTATTCTGGTTAATGCTTATTCTTTCTCTTGCAGATGACCAGTAAACATGGAGGTATTAATCTGACTTGTTATGACTGAAATTCCCAGTGCTTCAATAATGCTGATGGTGCTCCAGAGTAACCTATCATTAAAACACATGTCAAACC

Ace file of the UniGene sp_v3.0_unigene148603

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. pdb\|2C59\|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Ga	-	-	2.0e-10	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G28840.1	GME GDP-D-mannose 3',5'-epimerase chr5:10862472-10864024 REVERSE LENGTH=377	7.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_001190417.1	GDP-mannose 3,5-epimerase [Arabidopsis thaliana]	9.0e-14	53%
RefSeq	Populus trichocarpa	XP_002319639.1	predicted protein [Populus trichocarpa]	1.0e-14	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQV6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 177 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 81 - 312

Fln protein: QIFIPGINYLPVAKWIYYVFNLAADMDNMGFIQFNHSVIMYNKTIINFSILEAARGDVLKGETSICFSTWACIVCYLYSG*

Protein Length: 82

Fln nts: CCAGATTTTTATACCTGGTATAAATTATTTGCCTGTTGCCAAATGGATTTATTATGTTTTCAACTTGGCTGCAGACATGGATAACATGGGATTCATTCAGTTTAATCATTCTGTTATAATGTACAACAAGACCATAATCAACTTCAGCATACTTGAAGCTGCTCGAGGCGATGTGTTAAAAGGTGAGACTTCTATTTGTTTCAGTACTTGGGCTTGTATTGTCTGTTATCTTTATTCTGGTTAATGCTTATTCTTTCTCTTGCAGATGACCAGTAAACATGGAGGTATTAATCTGACTTGTTATGACTGAAATTCCCAGTGCTTCAATAATGCTGATGGTGCTCCAGAGTAACCTATCATTAAAACACATGTCAAACC

Fln Alignment:

HLKU4M001B0N82___NYLPVAKWIYYVFNLAADMDNMGFIQFNHSVIMYNKTIINFSILEAARGDVLKGETSICFSTWACI
B8LQV6________________NCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAAR---INGVKRFFYASSACI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain