SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148543

Length: 328 nt

UniGene Fasta

>sp_v3.0_unigene148543
CACTTCCAAGAATCATTCGCAGGGAGCCCCGCAATATCTCTTAGACAGAGTCCTTAGTGGAGTCTCCGATAGGAAGAGGACACAAGCAACGGGGAAGAATATGGACACATCGCCAAAAAGCGTAACAGTGCAGGTTGCTTTTGAGCTTGTTCAAGCAGGCCATCGCTATTTGGACGTGAGGACACTGGAGGAGTTTAATGCAGGCCATGTTGAAGATGCTATTAATGTCCCATACATGTTGAAAGCCGGAGAAGGGATGCCAGAGTGGGAGGAGGTCCCTTATGGCGACGAAAGATCTCATAGCTGTTGATTTCACAGGTGTCACTGA

Ace file of the UniGene sp_v3.0_unigene148543

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rhodanese domain containing protein	-	-	1.0e-05	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Senescence-associated protein	-	-	1.039e-14	-

Source	Gene names
Sma3	AT4G35770; AT4g35770; At4g35770; At5g66040; F8D20.280; K2A18.11; NRIP1; Ntdin; Os06g0725000; P0548E04.8-2; PHYPADRAFT_111073; PHYPADRAFT_185246; POPTRDRAFT_411299; RCOM_0017290; SAP; STR16; didiA9; din1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thiosulfate sulfurtransferase activity	GO:0004792	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	aging	GO:0007568	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiosulphate sulfurtransferase, conserved site	IPR001307	-	0.0	-
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66040.1	STR16 sulfurtransferase protein 16 chr5:26410557-26411139 FORWARD LENGTH=120	1.0e-15	63%
RefSeq	Arabidopsis thaliana	NP_851278.1	thiosulfate sulfurtransferase [Arabidopsis thaliana]	2.0e-15	63%
RefSeq	Populus trichocarpa	XP_002300675.1	predicted protein, partial [Populus trichocarpa]	1.0e-15	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKQ8

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 17 aas, your sequence is shorter than subject: 76 - 117

Fln protein: MDTSPKSVTVQVAFELVQAGHRYLDVRTLEEFNAGHVEDAINVPYMLKAGExxxQSGRRSLMATKDLIAVDFTGVT

Protein Length: 77

Fln nts: CACTTCCAAGAATCATTCGCAGGGAGCCCCGCAATATCTCTTAGACAGAGTCCTTAGTGGAGTCTCCGATAGGAAGAGGACACAAGCAACGGGGAAGAAT_-_ATGGACACATCGCCAAAAAGCGTAACAGTGCAGGTTGCTTTTGAGCTTGTTCAAGCAGGCCATCGCTATTTGGACGTGAGGACACTGGAGGAGTTTAATGCAGGCCATGTTGAAGATGCTATTAATGTCCCATACATGTTGAAAGCCGGAGAAxxxxxxxxxCAGAGTGGGAGGAGGTCCCTTATGGCGACGAAAGATCTCATAGCTGTTGATTTCACAGGTGTCACTGA

Fln Alignment:

HLKU4M001BS4RT___MDTSPKSVTVQVAFELVQAGHRYLDVRTLEEFNAGHVEDAINVPYMLKAGEGMxxxxxxxxxxxxxxxxxxxxxxGCQSGRRSLMATKDLIAVDFTGVT
A9NKQ8________________METSPKSVTVQVAFELVQAGHRYLDVRTLEEFNAGHVEDAINVPYMFKVGEGMxxxxxxxxxxxxxxxxxxxxxxGCQSGRRSLMAAKDLIVVDFTGVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain