SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148475

Length: 388 nt

UniGene Fasta

>sp_v3.0_unigene148475
TCTCATGCATCTCCTCAATGTTTGTGGTCGTCTGTTGAACGACATTCAGGGCTGCAAGAGAGAGGCCAAACAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAAGAAAATTCAGGAAGAACTGTGGAAGATGCGATTGCCTATTTGAGAAAAACTATTGATGAAAGCAGACAACTATTATTGAAAGAAGTGTTGTGACCAAGTATTGTTCCTCGTGAGTGCAAGCAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGACGGTTTCACATCTCCGACTGAGATGCTTGGGTATGTTAATGCGGTCATTGTCGATCCTATTCTGTAAAGTTGCAGATTACAAAAGAGTTATGCAGGCCATCTGGAGAAT

Ace file of the UniGene sp_v3.0_unigene148475

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(-)-ent-kaurene synthase n=4 Tax=Picea RepID=D2X8G1_PICGL	-	-	0.0	94%
FL-Next	tr=(-)-ent-kaurene synthase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	94%
Sma3	Ent-kaurene synthase	-	-	3.12e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ent-kaurene synthase.	EC:4.2.3.19	-	6.128e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Diterpenoid biosynthesis	00904	6.128e-08	%
Sma3	Biosynthesis of plant hormones	01070	6.128e-08	%
Sma3	Metabolic pathways	01100	6.128e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	6.128e-08	%

Source	Gene names
Sma3	KS; KS1; KS1A; KSL1; LOC_Os04g52230; OSJNBa0070C17.8; Os04g0611800; OsI_17356; OsJ_16126; OsKS1B; OsKS1C; PHYPADRAFT_107108; POPTRDRAFT_564162; PpCPS/KS; RCOM_0306870;

Source	GOs	Term	Type	Identity
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311286.1	ent-kaurene synthase [Populus trichocarpa]	3.0e-25	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D2XEB3

Fln msg: your sequence is shorter than subject: 115 - 757

Fln protein: LMHLLNVCGRLLNDIQGCKREAKQGKLNSVTLYMEENSGRTVEDAIAYLRKTIDESRQLLLKEVL*PSIVPRECKQLHWNMMRILQLFYLKNDGFTSPTEMLGYVNAVIVDPIL*

Protein Length: 116

Fln nts: TCTCATGCATCTCCTCAATGTTTGTGGTCGTCTGTTGAACGACATTCAGGGCTGCAAGAGAGAGGCCAAACAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAAGAAAATTCAGGAAGAACTGTGGAAGATGCGATTGCCTATTTGAGAAAAACTATTGATGAAAGCAGACAACTATTATTGAAAGAAGTGTTGTGACCAAGTATTGTTCCTCGTGAGTGCAAGCAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGACGGTTTCACATCTCCGACTGAGATGCTTGGGTATGTTAATGCGGTCATTGTCGATCCTATTCTGTAA___AGTTGCAGATTACAAAAGAGTTATGCAGGCCATCTGGAGAAT

Fln Alignment:

HLKU4M001ASDT4___LMHLLNVCGRLLNDIQGCKREAKQGKLNSVTLYMEENSGRTVEDAIAYLRKTIDESRQLLLKEVL*PSIVPRECKQLHWNMMRILQLFYLKNDGFTSPTEMLGYVNAVIVDPIL
D2XEB3________________LMHLLNICGRLLNDIQGCKREAHQGKLNSVTLYMEENSGTTMEDAIVYLRKTIDESRQLLLKEVLRPSIVPRECKQLHWNMMRILQLFYLKNDGFTSPTEMLGYVNAVIVDPIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain