SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148462

Length: 157 nt

UniGene Fasta

>sp_v3.0_unigene148462
ACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCTGATGGTAAGCATCATCATCATCATCATTCTGGAGTGTGCTGTGGCGGAGACGGTGGCGATGGGAAATTGCAGTCTGCAGCTGA

Ace file of the UniGene sp_v3.0_unigene148462

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Silencing group B protein	-	-	2.667e-12	-

Source	Gene names
Sma3	At5g13780; GSVIVT00028699001; H0410G08.10; MXE10.5; OSJNBa0043L09.27; Os04g0635800; OsI_17581; OsI_17596; OsJ_16314; POPTRDRAFT_641307; POPTRDRAFT_650021; SGB901; SGB902; VITISV_013774; sgb101;

Source	GOs	Term	Type	Identity
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Aluminium resistance	IPR009651	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSV4

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 51 - 192

Fln protein: DIEAKYYADGEDAYDMRKQLRVKSDGKHHHHHHSGVCCGGDGGDGKLQSAA

Protein Length: 52

Fln nts: ACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCTGATGGTAAGCATCATCATCATCATCATTCTGGAGTGTGCTGTGGCGGAGACGGTGGCGATGGGAAATTGCAGTCTGCAGCTGA

Fln Alignment:

HLKU4M001BLWA7___DIEAKYYADGEDAYDMRKQLR
A9NSV4________________DIEAKYYADGEDAYDMRKQLK

SSRs (tot: 1)

Start position	End position	Sequence	Length
84	101	CAT CAT CAT CAT CAT CAT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain