SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148408

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene148408
CGATCCATCGAGATTTGAAGGAGACGGTCCTCCTCCCTACACGTTTGTCCCGTTTGGAGGTGGCCCGCGAATGTGCCCAGGAAATGAGTTTGCACGGATGGAAATACTGGTTTTTGTCCATAATATTGTGAAGGCTTTCAAGTGGAGTTTGGTGAATCCGGGTGAGAAAGTGATTGTGGACCCTATGCCTGAACCTGTCAATGGACTGCCCATCAAACTCGTCCCA

Ace file of the UniGene sp_v3.0_unigene148408

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 716B2 n=2 Tax=Picea sitchensis RepID=C16B2_PICSI	-	-	1.0e-35	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Cytochrome P450	-	-	6.544e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Taxane 13-alpha-hydroxylase.	EC:1.14.13.77	-	1.069e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Diterpenoid biosynthesis	00904	1.069e-25	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.069e-25	%
Sma3	Metabolic pathways	01100	1.069e-25	%
Sma3	Biosynthesis of secondary metabolites	01110	1.069e-25	%

Source	Gene names
Sma3	10bh; At5g36110; At5g36130; CYP716A11P; CYP716A12; CYP716A3; CYP716A6; CYP716A8; CYP716A9; CYP716B1; CYP716B2; CYP716B3; CYP716B4; CYP716C1; CYP716C2v1; CYP716C2v2; CYP716D1; CYP716D2v1\|CYP716D3v1; CYP725A1; CYP725A2; GSVIVT00008990001; GSVIVT00016986001;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Hemocyanin, copper-type	IPR000896	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Cytochrome P450, B-class	IPR002397	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G36130.1	Cytochrome P450 superfamily protein chr5:14209293-14209811 REVERSE LENGTH=140	2.0e-32	63%
RefSeq	Arabidopsis thaliana	NP_198462.1	Cytochrome P450 family protein [Arabidopsis thaliana]	2.0e-32	63%
RefSeq	Populus trichocarpa	XP_002309057.1	cytochrome P450 [Populus trichocarpa]	3.0e-35	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P257

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 75 - 327

Fln protein: DPSRFEGDGPPPYTFVPFGGGPRMCPGNEFARMEILVFVHNIVKAFKWSLVNPGEKVIVDPMPEPVNGLPIKLVP

Protein Length: 76

Fln nts: CGATCCATCGAGATTTGAAGGAGACGGTCCTCCTCCCTACACGTTTGTCCCGTTTGGAGGTGGCCCGCGAATGTGCCCAGGAAATGAGTTTGCACGGATGGAAATACTGGTTTTTGTCCATAATATTGTGAAGGCTTTCAAGTGGAGTTTGGTGAATCCGGGTGAGAAAGTGATTGTGGACCCTATGCCTGAACCTGTCAATGGACTGCCCATCAAACTCGTCCCA

Fln Alignment:

HLKU4M001B8PXX___DPSRFEGDGPPPYTFVPFGGGPRMCPGNEFARMEILVFVHNIVKAFKWSLVNPGEKVIVDPMPEPVNGLPIKLVP
A9P257________________DPSRFEGAGPPPYTFVPFGGGPRMCPGNEFARMEILVFLHNIVKNFRWSLVNPGEKVIVDPMPVPVNGMPIKLFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain