SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148337

Length: 465 nt

UniGene Fasta

>sp_v3.0_unigene148337
ATCCTTGGAGCCCTACATTACAGATGTTTGGAAATCCGTAGATGTTCCAAACGCTACTGGTGAAGGCTCTCTTGACAATTATCATACTGAAATCACCAATGGATTGCAGAGGTGTCACAATGGCTGAGTGCCGTATTTGTCAGGAGGAGGACCAAAACAGAAATTTAGAGATTCCCTGTGCTTGTTCTGGCACCTTGAAGTATGCTCATAGGAAATGCATCGAGCGTTGGTCCCATCAAAAAGGAGATTCCATATGTGAATTGTGTAATCAGGAATATATAATGAGGAGGGTTGACCCAATGTGCGAGAGGAGATCCGAACCTACAGATGGGGCAGGATATAAAATTTGCTGTTCATGCACATCCAACATTATCTGAAGTGCTTGATGAGCTCTTCAAGCATGCCAAGATACACCACAAGACCAGAGTCACAACCCCGTGATGTATACAAGGAATAAGGAGCCAA

Ace file of the UniGene sp_v3.0_unigene148337

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref\|NP_974396.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb\|CAB61981.1\| putative protein [Arabidopsis thaliana] dbj\|BAE98651.1\| hypothetical protein [Arabidop	-	-	1.0e-17	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Protein binding protein	-	-	6.173e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrolipoyl dehydrogenase.	EC:1.8.1.4	-	1.054e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.054e-10	%
Sma3	Citrate cycle (TCA cycle)	00020	1.054e-10	%
Sma3	Glycine, serine and threonine metabolism	00260	1.054e-10	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.054e-10	%
Sma3	Pyruvate metabolism	00620	1.054e-10	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.054e-10	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.054e-10	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.054e-10	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.054e-10	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.054e-10	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.054e-10	%
Sma3	Biosynthesis of plant hormones	01070	1.054e-10	%
Sma3	Metabolic pathways	01100	1.054e-10	%
Sma3	Biosynthesis of secondary metabolites	01110	1.054e-10	%

Source	Gene names
Sma3	At2g02960; At3g47550; At5g62460; B1078G07.48-1; B1342F01.14; CHLREDRAFT_95634; F14L17.2; F1P2.100; GSVIVT00016333001; GSVIVT00020874001; GSVIVT00033119001; GSVIVT00034659001; GSVIVT00036958001; LOC_Os11g38800; OSJNBa0016C11.4; OSJNBa0079H23.14; Os01g01212

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	dihydrolipoyl dehydrogenase activity	GO:0004148	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Mercuric reductase	IPR000815	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	IPR012999	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14260.1	RING/FYVE/PHD zinc finger superfamily protein chr1:4873200-4874430 FORWARD LENGTH=265	9.0e-23	50%
RefSeq	Arabidopsis thaliana	NP_850667.1	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	8.0e-23	68%
RefSeq	Populus trichocarpa	XP_002315052.1	predicted protein [Populus trichocarpa]	6.0e-22	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 93 aas, your sequence is shorter than subject: 125 - 279

Fln protein: PWSPTLQMFGNP*MFQTLLVKALLTIIILKSPMDCRGVTMAECRICQEEDQNRNLEIPCACSGTLKYAHRKCIERWSHQKGDSICELCNQEYIMRRVDPMCERRSEPTDGAGYKICCSCTSNII*

Protein Length: 126

Fln nts: ATCCTTGGAGCCCTACATTACAGATGTTTGGAAATCCGTAGATGTTCCAAACGCTACTGGTGAAGGCTCTCTTGACAATTATCATACTGAAATCACCAATGGATTGCAGAGGTGTCACAATGGCTGAGTGCCGTATTTGTCAGGAGGAGGACCAAAACAGAAATTTAGAGATTCCCTGTGCTTGTTCTGGCACCTTGAAGTATGCTCATAGGAAATGCATCGAGCGTTGGTCCCATCAAAAAGGAGATTCCATATGTGAATTGTGTAATCAGGAATATATAATGAGGAGGGTTGACCCAATGTGCGAGAGGAGATCCGAACCTACAGATGGGGCAGGATATAAAATTTGCTGTTCATGCACATCCAACATTATCTGAAGTGCTTGATGAGCTCTTCAAGCATGCCAAGATACACCACAAGACCAGAGTCACAACCCCGTGATGTATACAAGGAATAAGGAGCCAA

Fln Alignment:

HLKU4M001AJDQU___ECRICQEEDQNRNLEIPCACSGTLKYAHRKCIERWSHQKGDSICELCNQEY
B8LQD2________________ECRICQEEDEDRSMEIPCACSGSMKYAHRKCVQRWCNEKGDTTCEICQQTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain