SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148326

Length: 392 nt

UniGene Fasta

>sp_v3.0_unigene148326
CCGTTTGAACTGGGATGATCGTGCAATTGTGTCTGATGATGCACATTTTCAGGGCAGGGGCAACAGAAGTAGTGGTGACTTTTTCCATGCAGCTCCAAATATTGACCATTCACAAGAGTTTGTGCGACGCGACTTGATTGATTGGCTGCAGTGGCTAAGGTGCTGGAAAAATGTGAGTACTGGCGTTTATATGATAAGAAAGGCAAACCTCCCGGGGTGGTTGGATGGTGGCCATCACGAGCAGTTACATTTATTGAGAATCATGATACTGGCTCAACTCAGGGTCACTGGAGATTTCCTGCTGGGAAAGAAATGCAAGGTTATGCATATATTTTGACGCATCCCGGAACTCCTGCTGTTTTCTATGATCATTTGTTTTCAAATAATTATAA

Ace file of the UniGene sp_v3.0_unigene148326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-amylase, putative n=1 Tax=Ricinus communis RepID=B9S2B5_RICCO	-	-	1.0e-37	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Alpha-amylase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-amylase.	EC:3.2.1.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3		EC:3.2.1.6-	-	3.377e-17	-

Source	Gene names
Sma3	AAM1; ALPHA-AMY3; AMY1; AMY1.1; AMY1.2; AMY1.3; AMY1.4; AMY1.5; AMY1.6; AMY1.7; AMY10; AMY1A; AMY2; AMY2A; AMY3; AMY3A; AMY3B; AMY3D; AMY3E; AMY4; AMY5; AMY9; AMYA1; AMYA2; AMYC2; AT4g25000; Aamy1; Aamy2; Aamy3; Amy23; Amy32b; Amy46; AmyF1; At1g69830; At1

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	alpha-amylase activity	GO:0004556	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	sucrose catabolic process	GO:0005987	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69830.1	ATAMY3, AMY3 alpha-amylase-like 3 chr1:26288518-26293003 REVERSE LENGTH=887	5.60519e-45	90%
RefSeq	Arabidopsis thaliana	NP_564977.1	alpha-amylase-like 3 [Arabidopsis thaliana]	5.60519e-45	90%
RefSeq	Populus trichocarpa	XP_002324108.1	predicted protein [Populus trichocarpa]	2.0e-35	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: Separated hits, possible frame ERROR between 160 and 175, Distance to subject end: 78 aas, your sequence is shorter than subject: 130 - 448

Fln protein: RLNWDDRAIVSDDAHFQGRGNRSSGDFFHAAPNIDHSQEFVRRDLIDWLQWLxxxxxxEYWRLYDKKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPAGKEMQGYAYILTHPGTPAVFYDHLFSNNY

Protein Length: 131

Fln nts: CCGTTTGAACTGGGATGATCGTGCAATTGTGTCTGATGATGCACATTTTCAGGGCAGGGGCAACAGAAGTAGTGGTGACTTTTTCCATGCAGCTCCAAATATTGACCATTCACAAGAGTTTGTGCGACGCGACTTGATTGATTGGCTGCAGTGGCTAAGxxxxxxxxxxxxxxxTGAGTACTGGCGTTTATATGATAAGAAAGGCAAACCTCCCGGGGTGGTTGGATGGTGGCCATCACGAGCAGTTACATTTATTGAGAATCATGATACTGGCTCAACTCAGGGTCACTGGAGATTTCCTGCTGGGAAAGAAATGCAAGGTTATGCATATATTTTGACGCATCCCGGAACTCCTGCTGTTTTCTATGATCATTTGTTTTCAAATAATTATAA

Fln Alignment:

HLKU4M001BRBTF___RLNWDDRAIVSDDAHFQ-GRGNRSSGDFFHAAPNIDHSQEFVRRDLIDWLQWLRxxxxxEYWRLYDKKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPAGKEMQGYAYILTHPGTPAVFYDHLFSNN
A9NUX3________________RLDWGPWAVTVNDKPFACGSGQADTGGDYAAAPDIDHTNPKIQQDLSEWMNWLKxxxxxELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNIWPFPSDKLLQGYAYILTHPGIPTIFYDHFVDGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain