SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148224

Length: 405 nt

UniGene Fasta

>sp_v3.0_unigene148224
CTGGACATTCAGGGAATCAGCCATCGAAATAAGCTCAGAGCTTAAAACCATGACATGACATTGAAGCAAGAAAATCATCATCTGAATTGTATCTAAGGAAGGCTCTCTTTGTGGGATCGAAAGATTTCGAGATTCTTAAGGAGATCTTCAGCTTACTCGGAACTCCAAATGAAGAAGTTTGGCCGGGAGTTTCACAACTCAGTTATTGGCATCCTTTTCCTCAATGGGAGGCCTGTGATCTCAGAACCCAAGTCCCGGATTTAGATGATGATGCTTTCGATTTGTTATCGAAACTGCTGGTATGTGACCCTTCGAAGAGAATCTCTGCCAAGCGTGCTCTGTTGCATCCTTATTTCTCTGAGTTGAGTAAAGCATAGCTACACAGTATTTTTAGAATGTGTCCCT

Ace file of the UniGene sp_v3.0_unigene148224

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-dependent kinase B2-2 n=2 Tax=Arabidopsis RepID=CKB22_ARATH	-	-	3.0e-25	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Cyclin-dependent kinase B1-1	-	-	3.639e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	2.483e-27	-
Sma3	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	1.142e-31	-

Source	Gene names
Sma3	13; At1g20930; At1g76540; At2g38620; At3g54180; CDC2; CDC2-1; CDC2-2; CDC2B; CDC2C; CDC2D; CDK-B; CDKA-1; CDKA-2; CDKB; CDKB1; CDKB1-1; CDKB1-2; CDKB2-1; CDKB2-2; Cdc2; CdkB1; CdkB1-1; CdkB1-2; DUNCDC2; F14G6.14; F24B22.140; F9H16.8; GSVIVT00002946001; GS

Source	GOs	Term	Type	Identity
Sma3	cyclin-dependent protein kinase holoenzyme complex	GO:0000307	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	-
Sma3	cyclin binding	GO:0030332	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	hormone-mediated signaling pathway	GO:0009755	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	stomatal complex formation	GO:0010376	Biological Process	-
Sma3	regulation of G2/M transition of mitotic cell cycle	GO:0010389	Biological Process	-
Sma3	histone phosphorylation	GO:0016572	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20930.1	" CDKB2;2 cyclin-dependent kinase B2;2 chr1:7292752-7294664 REVERSE LENGTH=315"	3.0e-32	55%
RefSeq	Arabidopsis thaliana	NP_173517.1	cyclin-dependent kinase B2-2 [Arabidopsis thaliana]	4.0e-32	55%
RefSeq	Populus trichocarpa	XP_002307822.1	predicted protein [Populus trichocarpa]	3.0e-31	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNM1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 125 - 302

Fln protein: GHSGNQPSK*AQSLKP*HDIEARKSSSELYLRKALFVGSKDFEILKEIFSLLGTPNEEVWPGVSQLSYWHPFPQWEACDLRTQVPDLDDDAFDLLSKLLVCDPSKRISAKRALLHPYFSELSKA*

Protein Length: 126

Fln nts: CTGGACATTCAGGGAATCAGCCATCGAAATAAGCTCAGAGCTTAAAACCATGACATGACATTGAAGCAAGAAAATCATCATCTGAATTGTATCTAAGGAAGGCTCTCTTTGTGGGATCGAAAGATTTCGAGATTCTTAAGGAGATCTTCAGCTTACTCGGAACTCCAAATGAAGAAGTTTGGCCGGGAGTTTCACAACTCAGTTATTGGCATCCTTTTCCTCAATGGGAGGCCTGTGATCTCAGAACCCAAGTCCCGGATTTAGATGATGATGCTTTCGATTTGTTATCGAAACTGCTGGTATGTGACCCTTCGAAGAGAATCTCTGCCAAGCGTGCTCTGTTGCATCCTTATTTCTCTGAGTTGAGTAAAGCATAG___CTACACAGTATTTTTAGAATGTGTCCCT

Fln Alignment:

HLKU4M001BD2Q9___SELYLRKALFVGSKDFEILKEIFSLLGTPNEEVWPGVSQLSYWHPFPQWEACDLRTQVPDLDDDAFDLLSKLLVCDPSKRISAKRALLHPYFSELSKA
A9NNM1________________AEMSRMQALFIGDSEVQQLFKIFRFLGTPNEEIWPGVTKLRDWHIYPQWKPQDISSAVPDLEPSGVDLLSKMLAYEPSKRISAKKALQHPYFDDLDKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain