SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148150

Length: 266 nt

UniGene Fasta

>sp_v3.0_unigene148150
AACTCTGAGTGAGTTTCCTTTTTGTTCAAAATTGTTGTAGTAGAAGAACCAACCATGTCTGGCGATGACAATGGCGGAAACCAGGGTACTGGCGCAGTGAGCATGGAGGAAGAGAATAAGCCCATAGACCAGGGTGCACGCATTATTCTCAAGGTCAAGAGCGAGGATGGAAATGATGTTTTATGCAAAATCAAGCGTAATACTCAATTGAGGAAGTTAATGACTATGTATTGTGATAAGCAATCCACTGATTTGAACTCCATAGC

Ace file of the UniGene sp_v3.0_unigene148150

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small ubiquitin-related modifier 1 n=2 Tax=Arabidopsis RepID=SUMO1_ARATH	-	-	4.0e-12	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Ubiquitin-like protein SMT3	-	-	2.995e-08	-

Source	Gene names
Sma3	At4g26840; At5g55160; F10M23.180; GSVIVT00010419001; GSVIVT00012332001; GSVIVT00025945001; POPTRDRAFT_552739; POPTRDRAFT_824434; RCOM_1719400; SMT3; SUMO; VITISV_013543; VITISV_032072;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein tag	GO:0031386	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	protein sumoylation	GO:0016925	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G26840.1	SUM1, SUMO 1, SUMO1, ATSUMO1 small ubiquitin-like modifier 1 chr4:13497466-13498458 FORWARD LENGTH=100	5.0e-18	59%
RefSeq	Arabidopsis thaliana	NP_194414.1	small ubiquitin-related modifier 1 [Arabidopsis thaliana]	7.0e-18	59%
RefSeq	Populus trichocarpa	XP_002321284.1	predicted protein [Populus trichocarpa]	2.0e-17	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN85

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 70 - 105

Fln protein: MSGDDNGGNQGTGAVSMEEENKPIDQGARIILKVKSEDGNDVLCKIKRNTQLRKLMTMYCDKQSTDLNSI

Protein Length: 71

Fln nts: AACTCTGAGTGAGTTTCCTTTTTGTTCAAAATTGTTGTAGTAGAAGAACCAACC_-_ATGTCTGGCGATGACAATGGCGGAAACCAGGGTACTGGCGCAGTGAGCATGGAGGAAGAGAATAAGCCCATAGACCAGGGTGCACGCATTATTCTCAAGGTCAAGAGCGAGGATGGAAATGATGTTTTATGCAAAATCAAGCGTAATACTCAATTGAGGAAGTTAATGACTATGTATTGTGATAAGCAATCCACTGATTTGAACTCCATAGC

Fln Alignment:

HLKU4M001BZX3I___MSGDDNGGNQGTGAVSMEEENKPIDQGARIILKVKSEDGNDVLCKIKRNTQLRKLMTMYCDKQSTDLNSI
A9NN85________________MSGVDNGGTPG--ATNQEEEKKPMDQGAHINLKVKGQDGNEVFFRIKRSTQLRKLMNAYCDRQSVDFNSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain