SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148071

Length: 450 nt

UniGene Fasta

>sp_v3.0_unigene148071
TGTAGTCCAATTATGAAGAATGATGTCTAGGATGTGATCCCCAGACCCAAGGACAAATTTGTTGTCACCTCGAAATGGCTCTTCAAGATCAAGCATGAAGCTATTAGAAGTGTTGAAAAGTTCAAGGCCAGATTCATTGCTCGAGGCTTATCTCAAAAGAAAGGTGTAGATTATGATGAGATATTTGCACCGGTTACCTGCTACACCACCATTCGTTCGATTATAGCTATTGCTGCCTCACAAGGATGGAATCTTCATCAAATGGATGTCAAGACTGCCTTTTTGCATGGTTCACTTAAGGAGGAAGTCTATGTAGAACAACCTGAGGGTTCGAAGTTCAAGATCATCAGTCACATTTATGCAAGTTGAAGAAAGCCCTCTATGGGTTGAAGGAAGCACCCTGGGCTTGGTATGAGAGGATTGATAGCTATCTAATGAAGTTGGGATTTA

Ace file of the UniGene sp_v3.0_unigene148071

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	2.0e-34	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	5.482e-15	-

Source	Gene names
Sma3	At2g05390; At2g15650; F11I4_21; F28L22.3; Fourf gag/pol; LOC_Os03g11850; LOC_Os03g13700; LOC_Os03g24260; LOC_Os03g29130; LOC_Os03g30450; LOC_Os03g61660; LOC_Os10g01750; LOC_Os10g03300; LOC_Os10g21730; LOC_Os10g31220; LOC_Os10g36460; LOC_Os11g02700; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Photosystem II PsbQ, oxygen evolving complex	IPR008797	-	-
Sma3	DNA helicase PIF1, ATP-dependent	IPR010285	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Separated hits, possible frame ERROR between 324 and 330, Distance to subject end: 209 aas, atg_distance in limit (1-15): atg_distance = 5, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 140 - 363

Fln protein: DVIPRPKDKFVVTSKWLFKIKHEAIRSVEKFKARFIARGLSQKKGVDYDEIFAPVTCYTTIRSIIAIAASQGWNLHQMDVKTAFLHGSLKEEVYVEQxxxFEVQDHQSHLCKLKKALYGLKEAPWAWYERIDSYLMKLGF

Protein Length: 141

Fln nts: TGTAGTCCAATTATGAAGAATGATGTCTAGG_-_ATGTGATCCCCAGACCCAAGGACAAATTTGTTGTCACCTCGAAATGGCTCTTCAAGATCAAGCATGAAGCTATTAGAAGTGTTGAAAAGTTCAAGGCCAGATTCATTGCTCGAGGCTTATCTCAAAAGAAAGGTGTAGATTATGATGAGATATTTGCACCGGTTACCTGCTACACCACCATTCGTTCGATTATAGCTATTGCTGCCTCACAAGGATGGAATCTTCATCAAATGGATGTCAAGACTGCCTTTTTGCATGGTTCACTTAAGGAGGAAGTCTATGTAGAACAACCxxxxxxGTTCGAAGTTCAAGATCATCAGTCACATTTATGCAAGTTGAAGAAAGCCCTCTATGGGTTGAAGGAAGCACCCTGGGCTTGGTATGAGAGGATTGATAGCTATCTAATGAAGTTGGGATTTA

Fln Alignment:

HLKU4M001BPH2B___IMKNDV*DVIPRPKDKFVVTSKWLFKIKHEAIRSVEKFKARFIARGLSQKKGVDYDEIFAPVTCYTTIRSXXXXXXSQGWNLHQMDVKTAFLHGSLKEEVYVEQPxxFEVQDHQSHLCKLKKALYGLKEAPWAWYERIDSYLMKLGF
B8LKV8________________IKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPxxYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain