SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147883

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene147883
GCCTCAAGGAGGTCATGAGTAGTTGTCCAGTGTTGGCTCTGCCAGATTTTTCGTCAGCCATTCGTCTTGGAGTGTGATGCCTCTAGAGAGGGACTTGGGGCGATTAAGATGCAGAATGGGCACCCTATTGCATTTGAGAGTCGGAAGCTGGAGAAGCATGAGAGACTGTACTCCATATATGACGAGGAGAATTACTATCCTCAGGA

Ace file of the UniGene sp_v3.0_unigene147883

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Brassica napus RepID=Q8W452_BRANA	-	-	1.0e-08	55%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1J6A6

Fln msg: Overlapping hits, possible frame ERROR between 68 and 49, Distance to subject end: 611 aas, your sequence is shorter than subject: 68 - 1577

Fln protein: LKEVMSSCPVLALPDxxxxxxxxECDASREGLGAIKMQNGHPIAFESRKLEKHERLYSIYDEENYYPQ

Protein Length: 69

Fln nts: GCCTCAAGGAGGTCATGAGTAGTTGTCCAGTGTTGGCTCTGCCAGATxxxxxxxxxxxxxxxxxxxxxxxxGAGTGTGATGCCTCTAGAGAGGGACTTGGGGCGATTAAGATGCAGAATGGGCACCCTATTGCATTTGAGAGTCGGAAGCTGGAGAAGCATGAGAGACTGTACTCCATATATGACGAGGAGAATTACTATCCTCAGGA

Fln Alignment:

HLKU4M001CA3QQ___LKEVMSSCPVLALPDxxxxxxxECDASREGLGAIKMQNGHPIAFESRKLEKHERLYSIYDEENY
I1J6A6________________LKEKLTKAPVLALPDxxxxxxxECDASGVGVGAVLLQGGHPIAYFSEKLHSATLNYPTYDKELY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain