SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147879

Length: 395 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene147879
GTGTTCTCCTGGTTTCGTCACTTCAAAGCCTTGATCGAGAATGAAACCGAAAAGAAGATCGAGATCTTAAGAACTGATAATGGGACTGAGTATGAATCCAGTGAGTTTCATGACTTTTGCAAAGAGACTGGCATTAAGAGGGAGAATACTACACCATATACTCCTAAGCAGAATGGTGTGGTGGAAAGGAAGAATTATACGATTGTGGAAGTTGTCCGTGCTATGCTCGATGATCAAAGACTTCCGAAGTTTCTATGGGCCGAAGCTACAAATACTACCGTATATGTACAAAACCGATGCCCTCATCAAGCATTGGGTTCCAAGACTCCCGAAGAGATTTTCACTGGTAAGAAACCTGACGTATCTCTATTTTAGTAATTTTTGGAAGTCCTGTA

Ace file of the UniGene sp_v3.0_unigene147879 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE4_ARATH	-	-	7.0e-31	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	7.246e-29	-

Source	Gene names
Sma3	AT4g04380; AT4g10460; At2g05960; At2g07550; At2g13930; At2g15700; At2g17490; At2g21460; B1110B01.13; F11I4_21; F7L13.40; H0801D08.16; LOC_Os03g21050; LOC_Os03g26290; LOC_Os03g27910; LOC_Os03g31134; LOC_Os03g33640; LOC_Os03g41000; LOC_Os03g43610; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR010256	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Berberine/berberine-like	IPR012951	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 125 - 407

Fln protein: VFSWFRHFKALIENETEKKIEILRTDNGTEYESSEFHDFCKETGIKRENTTPYTPKQNGVVERKNYTIVEVVRAMLDDQRLPKFLWAEATNTTVYVQNRCPHQALGSKTPEEIFTGKKPDVSLF*

Protein Length: 126

Fln nts: GTGTTCTCCTGGTTTCGTCACTTCAAAGCCTTGATCGAGAATGAAACCGAAAAGAAGATCGAGATCTTAAGAACTGATAATGGGACTGAGTATGAATCCAGTGAGTTTCATGACTTTTGCAAAGAGACTGGCATTAAGAGGGAGAATACTACACCATATACTCCTAAGCAGAATGGTGTGGTGGAAAGGAAGAATTATACGATTGTGGAAGTTGTCCGTGCTATGCTCGATGATCAAAGACTTCCGAAGTTTCTATGGGCCGAAGCTACAAATACTACCGTATATGTACAAAACCGATGCCCTCATCAAGCATTGGGTTCCAAGACTCCCGAAGAGATTTTCACTGGTAAGAAACCTGACGTATCTCTATTTTAGTAATTTTTGGAAGTCCTGTA

Fln Alignment:

HLKU4M001B09OB___VFSWFRHFKALIENETEKKIEILRTDNGTEYESSEFHDFCKETGIKRENTTPYTPKQNGVVERKNYTIVEVVRAMLDDQRLPKFLWAEATNTTVYVQNRCPHQALGSKTPEEIFTGKKPDVSLF
B8LKX7________________VFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain