SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147852

Length: 193 nt

UniGene Fasta

>sp_v3.0_unigene147852
GATGCATCGTCGAGCACGGGGAGGATGCATGCACCAAATGGATCGATGCCCACCTTCAATGCCTCAGGGCCGAGGGTTTCAAGACGGTAGATCTCGGCTCCGCCCTGCCTACTGGATCCGCAGCTTTAAGTGCTGAGGACCGTGCTGGTTTGGTAAAGGCTTTGAAGGATAAGCTGCAACATCTTGCTGGACA

Ace file of the UniGene sp_v3.0_unigene147852

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleosome/chromatin assembly factor group A n=2 Tax=Andropogoneae RepID=Q84UX6_MAIZE	-	-	7.0e-07	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At1g53030; At3g15352; COX17; GSVIVT00027683001; GSVIVT00034186001; OJ1695_H09.3; Os02g0794600; Os06g0149400; Os09g0420700; OsI_09266; OsI_21684; OsI_31395; OsJ_08703; OsJ_20136; OsJ_29395; P0624B04.18; P0668D04.31; P0700F06.35; P0710H01.4; PHYPADRAFT_1854

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrial intermembrane space	GO:0005758	Cellular Component	-
Sma3	copper chaperone activity	GO:0016531	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	copper ion transport	GO:0006825	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	response to copper ion	GO:0046688	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleosome assembly protein (NAP)	IPR002164	-	0.0	-
Sma3	Cytochrome c oxidase copper chaperone	IPR007745	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53030.1	Cytochrome C oxidase copper chaperone (COX17) chr1:19760224-19760442 REVERSE LENGTH=72	7.0e-12	81%
RefSeq	Arabidopsis thaliana	NP_175711.1	Cytochrome C oxidase copper chaperone (COX17) [Arabidopsis thaliana]	9.0e-12	81%
RefSeq	Populus trichocarpa	XP_002317498.1	predicted protein, partial [Populus trichocarpa]	2.0e-11	84%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT70

Fln msg: STOP codon was not found. Distance to subject end: 36 aas,

Fln protein: CIVEHGEDACTKWIDAHLQCLRAEGFKTVDLGSALPTGSAALSAEDRAGLVKALKDKLQHLAG

Protein Length: 64

Fln nts: GATGCATCGTCGAGCACGGGGAGGATGCATGCACCAAATGGATCGATGCCCACCTTCAATGCCTCAGGGCCGAGGGTTTCAAGACGGTAGATCTCGGCTCCGCCCTGCCTACTGGATCCGCAGCTTTAAGTGCTGAGGACCGTGCTGGTTTGGTAAAGGCTTTGAAGGATAAGCTGCAACATCTTGCTGGACA

Fln Alignment:

HLKU4M001B33WR___CIVEHGEDACTKWIDAHLQCLRAEGFK
A9NT70________________CIVEHGEDACTKWIDAHLRCLRAEGFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain