SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147690

Length: 768 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene147690 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin [Medicago truncatula]	-	-	1.0e-36	67%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%

Source	Gene names
Sma3	AT5G03240; At1g55060; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00025456001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; MICPUCDRAFT_17541; MICPUCDRAFT

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S28e	IPR000289	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05050.1	UBQ11 ubiquitin 11 chr4:2588271-2588960 REVERSE LENGTH=229	1.4013e-45	100%
RefSeq	Arabidopsis thaliana	NP_001190681.1	ubiquitin 11 [Arabidopsis thaliana]	0.0	100%
RefSeq	Populus trichocarpa	XP_002305607.1	predicted protein [Populus trichocarpa]	1.4013e-45	100%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
312	85		14		0.993533
313		28		71	1.0
315			85	14	0.993533
316			85	14	0.993533
319	15	84			1.0
322		68	31		1.0
323			15	84	1.0
324		73	26		1.0
326	84			15	1.0
327			84	15	1.0
328	84		15		1.0
330			84	15	1.0
331	15	84			1.0
335	84			15	1.0
336		15		84	1.0
337	84	15			1.0
343		84		15	1.0
344	84	15			1.0
347	15			84	1.0
348		84	15		1.0
536	90		10		0.90298
646	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain