SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147112

Length: 881 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene147112

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enhanced disease susceptibility 1 protein [Solanum tuberosum]	-	-	3.0e-30	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Putative uncharacterized protein	-	-	3.151e-07	-

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW04

Fln msg: Distance to subject end: 274 aas, your sequence is shorter than subject: 293 - 616

Fln protein: MFVYVAFPSFHKIESFTVGGNKYGEGNIQTNNKVFSDSLKGNDDKPALVHQGALKLFLDIMDVPDFQAQIYMDSEQRKLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPYCITFGCPLVGNEGIVEAVGRENWGGNFLHVISQHDIVPRMLLAPVESIAEPLTAILPYWHDKVADVSIEDAWTLLISVLQYTATVAYYGVDSRGSDGVIKRSPYKPFGTCMFCSNHGAACIENSETVLMMLHLTMQSHEKLSDIILRDWFSEHIRYDSVLEHVIENSISGKGSANSDSKSY

Protein Length: 294

Fln nts: AATGTTTGTATATGTTGCCTTCCCTTCCTTTCATAAAATAGAAAGTTTCACCGTCGGAGGGAACAAATATGGGGAGGGCAATATACAAACTAACAACAAGGTATTCTCGGATTCCCTCAAGGGTAATGATGACAAACCAGCACTGGTCCATCAAGGAGCACTTAAGCTGTTCCTGGATATTATGGATGTACCAGATTTCCAAGCACAGATTTATATGGACTCCGAACAAAGGAAACTCAAGCCCATTATATTTGTGGGGCATTCCTTAGGAGGGGCAGTTGCAACCTTGGCTACATTATGGGTACTGGAAAAGAGGCTAAGGCAAAGTTCTCCATATTGTATCACTTTTGGTTGCCCTTTAGTGGGAAATGAAGGAATTGTTGAAGCAGTTGGTCGTGAGAATTGGGGAGGCAACTTTTTGCATGTGATTTCCCAGCATGATATTGTTCCTCGGATGCTCCTTGCACCGGTTGAATCCATTGCTGAGCCTTTGACTGCTATCTTGCCGTATTGGCATGACAAAGTCGCTGATGTTTCTATTGAAGATGCTTGGACTCTTCTTATAAGTGTCCTGCAGTATACTGCTACAGTGGCATACTATGGAGTTGATTCAAGGGGATCAGATGGGGTTATAAAGAGAAGCCCATACAAACCTTTTGGTACTTGTATGTTTTGCTCAAACCATGGCGCAGCTTGTATTGAGAATTCTGAGACCGTTTTGATGATGCTTCATTTGACAATGCAGAGCCATGAAAAGCTTTCTGATATTATTTTACGGGACTGGTTTTCAGAGCATATACGATATGATTCTGTTTTGGAACATGTCATAGAAAACTCCATAAGTGGTAAAGGATCTGCCAATTCTGATTCCAAATCCTACT

Fln Alignment:

AllPine_a_rep_c121692___VYVAFPSFHKIESFTVGGNKYGEGNIQTNNKVFSDSLKGNDDKPALVHQGALKLFLDIMDVPDFQAQIYMDSEQRKLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPYCITFGCPLVGNEGIVEAVGRENWGGNFLHVISQHDIVPRMLLAPVESIAEPLTAILPYWHDKVADVSIEDAW-TLLISVLQYTATVAYYGVDSRGSDGVIKRSPYKPFGTCMFCSNHGAACIENSETVLMMLHLTMQSHEKLSDIILRDWFSEHIRYDSVLEHVIENSISGKGSANSDSKS
A9NW04________________VYVAFPSFHRIESFIVKVSKYGEGNIQTNNRVFSDCLKGNDDKPALVHQGALKLFLHIMEKTGFQAKIYTDSRQRKLKPIIFVGHSLGGAVATLATLWVLEKRVRQSSPFCITFGCPLVGDERLVEAVGRENWGGNFFHVISQHDIVPRMLLAPIESIAEPLTAILPYWHDKVADSSIQDACRTLLENVLQYTYTVAYYGVDSRGSDGVIKRSPYKPLGTYMFCSSHGAACIDNSETILKLLHFTMQSHEKLSDNIVQDWFSEHIGYGAVLKHVIENSISGKRFANPDSKS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
331	33	66			0.997452
332	33			66	0.997452
333		66		33	0.997452
334		66	33		0.997452
335	66			33	0.997452
391	20			80	0.995493
392	20			80	0.995493
393			80	20	0.995493
506	20		80		0.995493
507	20	80			0.995493
508		80		20	0.995493
568	14			85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain