SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147074

Length: 770 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene147074

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase_3 domain containing protein	-	-	7.0e-15	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	PAD4	-	-	4.703e-10	-

Source	Gene names
Sma3	GSVIVT00019308001; POPTRDRAFT_217284; POPTRDRAFT_558462; VITISV_000646;

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48090.1	EDS1, ATEDS1 alpha/beta-Hydrolases superfamily protein chr3:17755553-17757692 REVERSE LENGTH=623	4.0e-16	47%
RefSeq	Arabidopsis thaliana	NP_001030829.1	enhanced disease susceptibility 1 protein [Arabidopsis thaliana]	4.0e-16	47%
RefSeq	Populus trichocarpa	XP_002307051.1	PAD4 [Populus trichocarpa]	5.0e-24	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM08

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 368 and 368, Distance to subject end: 234 aas, your sequence is shorter than subject: 256 - 595

Fln protein: NIVFLYYMINQLQIYTDSQQKKLKPIIFVGQSIGGAVATLATLWVLGKRLRQSSPFCITFGCPLVGDERLVEAVGRENWGGNFCHVVSKHDIVPRMLLAPIESIAMPFITICSYWQGINVHxxLIQDAARTLLNQIFVSPSSPYRPFGTYMFCSSNGAACIQNAQTVLEMLSLTMRSQQTSFDEIVQACLSEHIRYDSVLEEVLQNSIRGIRSIENSNSESPYEMGILLQLEAIGVGARNDHAQLAYEKLEKLKKG

Protein Length: 257

Fln nts: GTAACATTGTATTCCTGTATTACATGATCAATCAGTTGCAGATTTACACGGACTCCCAACAAAAGAAACTCAAGCCCATCATATTTGTGGGTCAGTCCATAGGAGGGGCAGTTGCAACCTTGGCCACATTATGGGTTCTGGGAAAGAGGCTAAGGCAAAGCTCTCCCTTTTGTATCACGTTTGGTTGCCCTCTGGTCGGAGATGAAAGGCTTGTTGAAGCAGTTGGCCGTGAGAACTGGGGAGGAAACTTTTGTCACGTGGTTTCCAAGCATGATATTGTTCCTCGGATGCTCCTAGCACCGATTGAGTCAATTGCTATGCCCTTTATTACTATTTGTTCTTATTGGCAGGGCATAAATGTGCATxxxxxxTTAATTCAAGATGCTGCCAGGACTCTTCTGAATCAGATCTTTGTTTCTCCAAGCAGCCCGTACAGACCTTTTGGCACTTACATGTTTTGCTCAAGCAATGGTGCAGCTTGTATTCAAAACGCTCAGACGGTTTTGGAAATGCTTAGTTTGACTATGCGAAGCCAACAAACTTCTTTTGATGAGATTGTACAGGCTTGTCTTTCGGAGCACATAAGGTATGATTCTGTTTTGGAGGAGGTTTTGCAGAACTCCATAAGAGGGATACGATCAATAGAGAATTCCAATTCAGAATCCCCTTACGAGATGGGTATTTTATTGCAGCTTGAAGCTATTGGCGTTGGAGCTCGGAATGATCATGCACAGCTTGCCTACGAAAAGCTGGAGAAACTGAAGAAAGGTA

Fln Alignment:

AllPine_a_rep_c121615___QLQIYTDSQQKKLKPIIFVGQSIGGAVATLATLWVLGKRLRQSSPFCITFGCPLVGDERLVEAVGRENWGGNFCHVVSKHDIVPRMLLAPIESIAMPFITICSYWQGINVHDSLIQDAARTLLNQIFVSPSSPYRPFGTYMFCSSNGAACIQNAQTVLEMLSLTMRSQQTSFDEIVQACLSEHIRYDSVLEEVLQNSIRGIRSIENSNSESPYEMGILLQLEAIGVGARNDHAQLAYEKLEKLK
B8LM08________________KLQIYTDAKQRKLKPIIFVGHSLGGAVATLATLWVLGKRLRQSSPFCITFGCPLVGDERLVEAVGRENWGGNFCHVVSKHDIVPRMLLAPFESIANPFTTVFGYWQGKNVPDSLIQDASRTLLNNVFVSPSSPYRPFGTYMFCSSNGAACIENAQTVLEMLHLTMQSQHTSFDEIVQACLLEHIRYDSVLEEVRQNSIRGIR-IAKSNSESSYEMGISSQLEAIGVGAQNDRAQRALLKAGELE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
581	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain