SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146877

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene146877
ACAGGGGATTTGAACCAGTGACCTATCACAAGGAGTGCCTTAAGCCCATCCACCGTCAGTCCAAAGCCCTGTGGGTTCGCAAGGTCTCCTTATTCAATATGATGACATTTAAGGTCATGACAACTTTCATGCCACATGCGACCACTTTTCTGGCTTTTCCACCCTCGGAACAAATAACATCATTGCAATTGGCATGGAGGATTCATCAATTCAAATATACAATGTCAGAACACAGCTCAAGGGGCGACCAAAAGAAATCACTGGCCTGGCTTTTTCACTTGTTTTGAATGTTTTCTATCTTCTAGAGCTGATGCCTGAGTTATGTCTC

Ace file of the UniGene sp_v3.0_unigene146877 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%

Source	Gene names
Sma3	AT3G15880; At1g15750; At1g80490; At3g15880; CTV.2; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00016938001; PHYPADRAFT_150439; PHYPADRAFT_234967; POPTRDRAFT_736537; POPTRDRAFT_819083; RCOM_0902410; RCOM_1074790; RCOM_1324430; SBB1_14t00008; T21F11

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16830.1	TPR2 TOPLESS-related 2 chr3:5731709-5737531 FORWARD LENGTH=1131	1.0e-18	71%
RefSeq	Arabidopsis thaliana	NP_188306.2	Topless-related 2 protein [Arabidopsis thaliana]	2.0e-18	71%
RefSeq	Populus trichocarpa	XP_002308068.1	predicted protein [Populus trichocarpa]	2.0e-18	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRZ0

Fln msg: Separated hits, possible frame ERROR between 170 and 173, Distance to subject end: 190 aas, your sequence is shorter than subject: 109 - 1131

Fln protein: RGFEPVTYHKECLKPIHRQSKALWVRKVSLFNMMTFKVMTTFMPHATTFLAFPPSxxNNIIAIGMEDSSIQIYNVRTQLKGRPKEITGLAFSLVLNVFYLLELMPELCL

Protein Length: 110

Fln nts: ACAGGGGATTTGAACCAGTGACCTATCACAAGGAGTGCCTTAAGCCCATCCACCGTCAGTCCAAAGCCCTGTGGGTTCGCAAGGTCTCCTTATTCAATATGATGACATTTAAGGTCATGACAACTTTCATGCCACATGCGACCACTTTTCTGGCTTTTCCACCCTCGGAxxxAAATAACATCATTGCAATTGGCATGGAGGATTCATCAATTCAAATATACAATGTCAGAACACAGCTCAAGGGGCGACCAAAAGAAATCACTGGCCTGGCTTTTTCACTTGTTTTGAATGTTTTCTATCTTCTAGAGCTGATGCCTGAGTTATGTCTC

Fln Alignment:

AllPine_a_rep_c121220___KVSLFNMMTFKVMTTFM--PHATTFLAFPPSExNNIIAIGMEDSSIQIYNVR-----TQLKGRPKEITGLAFSLVLNV
Q9LRZ0________________KVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDxNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain