SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146784

Length: 345 nt

UniGene Fasta

>sp_v3.0_unigene146784
ATGGGGCGCCGTGGCTCAGAAGGCCCTCGCAGACGCCCGCTCCATCAAGCTCGATGGGCCCCTCCGCCCTCAGGGGCAAGCCGGGAACGTTGCTGTCAGACGAGGCGAGGGACCTGGAACTGCCGTTGAAGGAACGGTTCTATATTCAGCCCCTCTCGGCGGACCAGGCGGCTGCGAGAGCCAAGGAATCCGCGAAGCAAATCCTGGAGGTGAAAAAGCTGATAGATAAGAAGGCGTGGCCGTACGTCCAGAACGACCTCCGCTCCAAGGCTTCTTACCTTCGCTATGGTGGTGGTGGTGGTTCCGATGGTGGTAGCTGGAGGAGATAGTTAATATGATGCTGCG

Ace file of the UniGene sp_v3.0_unigene146784

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PsbQ n=3 Tax=Nicotiana RepID=Q53UI6_TOBAC	-	-	2.0e-24	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	OEE3	-	-	3.992e-25	-

Source	Gene names
Sma3	At4g05180; At4g21280; C17L7.100; F7J7.220; GSVIVT00012553001; LOC_Os07g36080; OEE3; OJ1582_D10.19; Os07g0544800; OsI_025465; OsJ_24632; PHYPADRAFT_162315; PHYPADRAFT_173848; PHYPADRAFT_192554; POPTRDRAFT_831063; POPTRDRAFT_834003; PSBQ; PSBQ1; PSBQ2; PSBQ

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Photosystem II PsbQ, oxygen evolving complex	IPR008797	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05180.1	PSBQ, PSBQ-2, PSII-Q photosystem II subunit Q-2 chr4:2672093-2673170 REVERSE LENGTH=230	4.0e-29	73%
RefSeq	Arabidopsis thaliana	NP_193860.1	oxygen-evolving enhancer protein 3-1 [Arabidopsis thaliana]	9.0e-30	71%
RefSeq	Populus trichocarpa	XP_002317273.1	hypothetical protein POPTRDRAFT_834003 [Populus trichocarpa]	6.0e-30	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 43 aas, your sequence is shorter than subject: 109 - 219

Fln protein: GAPWLRRPSQTPAPSSSMGPSALRGKPGTLLSDEARDLELPLKERFYIQPLSADQAAARAKESAKQILEVKKLIDKKAWPYVQNDLRSKASYLRYGGGGGSDGGSWRR*

Protein Length: 110

Fln nts: ATGGGGCGCCGTGGCTCAGAAGGCCCTCGCAGACGCCCGCTCCATCAAGCTCGATGGGCCCCTCCGCCCTCAGGGGCAAGCCGGGAACGTTGCTGTCAGACGAGGCGAGGGACCTGGAACTGCCGTTGAAGGAACGGTTCTATATTCAGCCCCTCTCGGCGGACCAGGCGGCTGCGAGAGCCAAGGAATCCGCGAAGCAAATCCTGGAGGTGAAAAAGCTGATAGATAAGAAGGCGTGGCCGTACGTCCAGAACGACCTCCGCTCCAAGGCTTCTTACCTTCGCTATGGTGGTGGTGGTGGTTCCGATGGTGGTAGCTGGAGGAGATAGTTAATATGATGCTGCG

Fln Alignment:

AllPine_a_rep_c121042___PSALRGKPGTLLSDEARDLELPLKERFYIQPLSADQAAARAKESAKQILEVKKLIDKKAWPYVQNDLRSKASYLRY
A9P1P9________________PPPSGGKPGTLLSDEARDLDLPLKERFYIQPLSVEQAAARAKESAKEILEVKKLIDKKAWPYVQNDLRSKASYLRY

SSRs (tot: 1)

Start position	End position	Sequence	Length
287	302	TGG TGG TGG TGG TGG T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain