SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146732

Length: 489 nt

UniGene Fasta

>sp_v3.0_unigene146732
TCAGTCTATAGATCTATCAATGTAGTAGAATTGTATATTAATGTACGTAAAACTTGTTTTATATGTCTATCTTTAGATTTAAACAAGTATATTTTCTGAAGTGAACATATCCAACGGGAGCACTTTAAAAAGGAGTTGTCTATAATGCGATTTTTGGAGATTCGGAATCCGGCGGAAGAAATTGAGGTGGGATCATCAGGTTGGCAGTATATGACCCGCAAAAACGGTGCAATTTGGGGCATTCAGAATCCTCCCATAGGTTCCCTGTCATTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACAAGAAATTTACTGCCCGCAATCTGGAGGCCAGGCTCTGTTTATGAATCTGGAGTTTAGATCACAGAAATTGCGCAAGAAGGTTGTAGTCCCTGCGAAACTGGCAACTGGGCTGACGCATTTGTTAATTAATTGTGATAATCCACAGTGGAGTAGAGCAATTGTTGAGGC

Ace file of the UniGene sp_v3.0_unigene146732

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	8.0e-25	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Expansin-like protein	-	-	1.743e-11	-

Source	Gene names
Sma3	At3g45960; At4g38400; EXLA1; EXLA2; EXLA3; EXPL1; EXPL2; EXPL3; F22I13.170; GSVIVT00036225001; LOC_Os03g04020; LOC_Os07g29290; LOC_Os10g39640; OJ1004C08.4; OSJNBb0015I11.10; Os03g0132200; Os07g0475400; Os10g0542400; OsI_09865; OsI_25963; OsJ_32328; P0571D

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sexual reproduction	GO:0019953	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38400.1	ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 expansin-like A2 chr4:17978675-17979665 REVERSE LENGTH=265	3.0e-25	54%
RefSeq	Arabidopsis thaliana	NP_195553.1	expansin-like A2 [Arabidopsis thaliana]	3.0e-25	54%
RefSeq	Populus trichocarpa	XP_002305545.1	hypothetical protein POPTRDRAFT_713415 [Populus trichocarpa]	3.0e-29	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 150 - 274

Fln protein: SVYRSINVVELYINVRKTCFICLSLDLNKYIF*SEHIQREHFKKELSIMRFLEIRNPAEEIEVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGV*ITEIAQEGCSPCETGNWADAFVN*

Protein Length: 151

Fln nts: TCAGTCTATAGATCTATCAATGTAGTAGAATTGTATATTAATGTACGTAAAACTTGTTTTATATGTCTATCTTTAGATTTAAACAAGTATATTTTCTGAAGTGAACATATCCAACGGGAGCACTTTAAAAAGGAGTTGTCTATAATGCGATTTTTGGAGATTCGGAATCCGGCGGAAGAAATTGAGGTGGGATCATCAGGTTGGCAGTATATGACCCGCAAAAACGGTGCAATTTGGGGCATTCAGAATCCTCCCATAGGTTCCCTGTCATTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACAAGAAATTTACTGCCCGCAATCTGGAGGCCAGGCTCTGTTTATGAATCTGGAGTTTAGATCACAGAAATTGCGCAAGAAGGTTGTAGTCCCTGCGAAACTGGCAACTGGGCTGACGCATTTGTTAATTAA___TTGTGATAATCCACAGTGGAGTAGAGCAATTGTTGAGGC

Fln Alignment:

AllPine_a_rep_c120932___EVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGV*ITEIAQEGCSPCETGNWADAFVN
A9NMA2________________QVGSSGWQYMTRNQGAIWGMQNPPRGYLSFRLLVTGGYDGSWVWPRRNLLPSIWTPGSVYESGIQITEIAQEGCSPCETGNWTDTYVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain