SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146552

Length: 556 nt

UniGene Fasta

>sp_v3.0_unigene146552
ACTCAGGAAGAATATCGCTTATTCCAGAATTAAGTGTAATCTCCATTGCAGACTTGGAGGTATCCTTGTAAAAGACAGACGCCTGTTTGCGGTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCCAAGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCAGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAG

Ace file of the UniGene sp_v3.0_unigene146552

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI	-	-	91%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Daucus carota (Carrot).	-	-	58%
Sma3	S-adenosylmethionine decarboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:4.1.1.5-	-	0.0	-

Source	Gene names
Sma3	ADOMETDC2; At3g02470; At3g25570; At5g15950; At5g18930; CT093; F1N13_90; GSVIVT00017121001; GSVIVT00021193001; GSVIVT00038126001; OJ1004_A05.7; OJ1476_F05.33; Os02g0611200; Os09g0424300; OsI_015951; OsI_08032; OsI_31419; OsJ_07492; OsJ_29417; P0418B08.27-1

Source	GOs	Term	Type	Identity
Sma3	adenosylmethionine decarboxylase activity	GO:0004014	Molecular Function	-
Sma3	spermine biosynthetic process	GO:0006597	Biological Process	-
Sma3	spermidine biosynthetic process	GO:0008295	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02470.1	SAMDC S-adenosylmethionine decarboxylase chr3:510223-511323 FORWARD LENGTH=366	8.0e-39	56%
RefSeq	Arabidopsis thaliana	NP_001154585.1	S-adenosylmethionine decarboxylase 1 beta chain [Arabidopsis thaliana]	1.0e-38	56%
RefSeq	Populus trichocarpa	XP_002329311.1	predicted protein, partial [Populus trichocarpa]	4.99997e-41	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9AXE3

Fln msg: Separated hits, possible frame ERROR between 168 and 171, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 28 aas, your sequence is shorter than subject: 185 - 361

Fln protein: TQEEYRLFQN*V*SPLQTWRYPCKRQTPVCGPVYTLEMCMTQLDRKQASVFYKDTxxAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTY

Protein Length: 186

Fln nts: ACTCAGGAAGAATATCGCTTATTCCAGAATTAAGTGTAATCTCCATTGCAGACTTGGAGGTATCCTTGTAAAAGACAGACGCCTGTTTGCGGTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCxxxAGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCAGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAG

Fln Alignment:

AllPine_a_rep_c120487___CKRQTPVCGPVYTLEMCMTQLDRKQASVFYKDTSxAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTY
Q9AXE3________________CAASTRTLDPVYTMEMCMTSLNRDKASVFYKTNSxATSVTDNSGLRDILPNSRICDFEFDPCGYSMNAVEGPAVSTIHITPEDGFSYSSFEAVGYDPKSVNLSDLVARVLNCFQPGEFSIALQADIASELLEKTSSVHVKGYRVEEKTCEELGMDGSIVYQKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain