SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146539

Length: 462 nt

UniGene Fasta

>sp_v3.0_unigene146539
AAATTGCGGAAGGATGCAACAAAAGGCGCTTTAGTCCAATCGGTCTTCACAAGCCCACCTCTGGTTGCCTCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAAGAACTACATGATCTACGATTACTGTGGAGACACCAAAAGATTCCCACAGGGACCGCCTCCCGAATGCAAATGAACCCTCAATTCAATTCCATTCCATTGAATTCAGAGAATGAATTCTTCTGGATACCTGACCCTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTCAGGCACACATGACCTATTCTTTCATTCTTTTTCAGACACACAGAAAAAGAAACTTTCAATTACTCTTTCTTATTACATCTATTCTTTCATTCTTTGTCAGAAACACAC

Ace file of the UniGene sp_v3.0_unigene146539

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xyloglucan endotransglycosylase LeXET2 [Solanum lycopersicum]	-	-	3.0e-10	44%
FL-Next	sp=Xyloglucan endotransglucosylase/hydrolase protein 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P24806

Fln msg: your sequence is shorter than subject: 82 - 269

Fln protein: KLRKDATKGALVQSVFTSPPLVASFRNFSAATASSFDAAAEEAALESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK*

Protein Length: 83

Fln nts: AAATTGCGGAAGGATGCAACAAAAGGCGCTTTAGTCCAATCGGTCTTCACAAGCCCACCTCTGGTTGCCTCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAAGAACTACATGATCTACGATTACTGTGGAGACACCAAAAGATTCCCACAGGGACCGCCTCCCGAATGCAAATGA___ACCCTCAATTCAATTCCATTCCATTGAATTCAGAGAATGAATTCTTCTGGATACCTGACCCTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTCAGGCACACATGACCTATTCTTTCATTCTTTTTCAGACACACAGAAAAAGAAACTTTCAATTACTCTTTCTTATTACATCTATTCTTTCATTCTTTGTCAGAAACACAC

Fln Alignment:

AllPine_a_rep_c120460___ATKGALVQSVFTSPPLVASFRNFXXXXXXXXXXXXXXXXXXXXXXQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC
P24806________________ATRGGLVKTDWSKAPFMASYRNIKIDSKPNSNWYTQEMDSTSQA--RLKWVQKNYMIYNYCTDHRRFPQGAPKEC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain