SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146471

Length: 534 nt

UniGene Fasta

>sp_v3.0_unigene146471
GTTTTTGTAGCTTCATTCTTTCTCGATTGTTGTTATAAGCGAGTTCGATTCTCTTCTGATCGATCCATAGTGCCAGTGAAGGTTGCAAGGTATTTTACCAGCTTGCCTTCAAAATTCAAATGGCTGCTTGTGGTTCGCGGCATCGACTCACTGTGATCCTGCAGATGGGCGTGTTTTGTATGGCGGTATTGTGGGCATCTGCTGCTGCTGCTGCTGGTGGACAGTCCAGGAAACTTTCTGCTTTGGTGGAAGAGGCATCTGTTGTTTTGACTTACCATGATGGTCCTCTGCTCTCTGCCAGTGGGGTGATCCCTCTCCATTTGATTTGGTATGGGCAGTTCACCCCTGTTCAACGCTCCATTGTGGGGGATTTTGTACAATCTCTTGGGGCACAGACGTTAGAGGGAAAGGCAAATCAGCCCTCCGCCTCCACTTGTGGGATCCGTGTACCATACGTTGGCGCCCACTCTAACAACAAGGCCGCCCCATCCACATCCATTCAACACCGGCTACTTCCAAGGGGATGCCGCTGCA

Ace file of the UniGene sp_v3.0_unigene146471

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	2.0e-09	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	7.0e-13	45%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	9.0e-13	45%
RefSeq	Populus trichocarpa	XP_002298705.1	predicted protein [Populus trichocarpa]	2.0e-12	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ56

Fln msg: Distance to subject end: 218 aas, your sequence is shorter than subject: 138 - 359

Fln protein: MAACGSRHRLTVILQMGVFCMAVLWASAAAAAGGQSRKLSALVEEASVVLTYHDGPLLSASGVIPLHLIWYGQFTPVQRSIVGDFVQSLGAQTLEGKANQPSASTCGIRVPYVGAHSNNKAAPSTSIQHRLLPRGCRC

Protein Length: 139

Fln nts: GTTTTTGTAGCTTCATTCTTTCTCGATTGTTGTTATAAGCGAGTTCGATTCTCTTCTGATCGATCCATAGTGCCAGTGAAGGTTGCAAGGTATTTTACCAGCTTGCCTTCAAAATTCAA_-_ATGGCTGCTTGTGGTTCGCGGCATCGACTCACTGTGATCCTGCAGATGGGCGTGTTTTGTATGGCGGTATTGTGGGCATCTGCTGCTGCTGCTGCTGGTGGACAGTCCAGGAAACTTTCTGCTTTGGTGGAAGAGGCATCTGTTGTTTTGACTTACCATGATGGTCCTCTGCTCTCTGCCAGTGGGGTGATCCCTCTCCATTTGATTTGGTATGGGCAGTTCACCCCTGTTCAACGCTCCATTGTGGGGGATTTTGTACAATCTCTTGGGGCACAGACGTTAGAGGGAAAGGCAAATCAGCCCTCCGCCTCCACTTGTGGGATCCGTGTACCATACGTTGGCGCCCACTCTAACAACAAGGCCGCCCCATCCACATCCATTCAACACCGGCTACTTCCAAGGGGATGCCGCTGCA

Fln Alignment:

AllPine_a_rep_c120313___MAACGSRHRLTVILQMGVFCMAVLWXXXXXXXGGQSRKLSALVEEASVVLTYHDGPLLSASGVIPLHLIWYGQFTPVQRSIVGDFVQSLGAQTLEG-KANQPSAST-CGIRVPYVGAHSN-----NKAAPSTSI
B8LQ56________________MAGYVSWPRLTAMLQM-VVCMAIL---CSSPAAGHLRKLAALVEEPSVVLTYHDGPLLSTSGVIPVHLIWYGKFTPVQRTIVGDFLQSLGAKTLEGTNAKLPSASTWWKTTEKYEGAASNKAAPSNKAAPSSVI

SSRs (tot: 1)

Start position	End position	Sequence	Length
199	216	CTG CTG CTG CTG CTG CTG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain