SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146456

Length: 1301 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene146456

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38400.1	ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 expansin-like A2 chr4:17978675-17979665 REVERSE LENGTH=265	49%
RefSeq	Arabidopsis thaliana	NP_195553.1	expansin-like A2 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002305545.1	hypothetical protein POPTRDRAFT_713415 [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg:

Fln protein: MKIFNNPLLFAVWVLSMVSAALSCDRCLHKSKVSSFARANINGACGYGDSATSLTARGGLVMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTDFTKSTETDFVLSAGSFSKLAVASKAAQFLKMGTVDIDYKRIPCDYGSQNMTVKVDTSSKYPDYEAVQFLYQGGQTDITAVDIDWVGSSDWQYMTHKNGAIWGMQNPRRGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIAQEGCSPCETGNWTDTRIR*

Protein Length: 274

Fln nts: TGCTATGTAAGAGTAATAAAGTAGTTTGAAATTTCTAAATAATCCACCAACGGATTTGACGGCACGTTTTTCAAATACCCATGTCGGTTTACCGTGTACATCAAGTCGCTGATGTCCACTGCAACAACAGTAGGCAAGCGTTCAAATCCACAGTAAGTGCTTGCGATCTGCTGCAGCTTTCCCAATTACTGCTGTCGGTCATCATTGAACGCGTTTTCCTTGGTTTCTTCCTTCCCTGTTCTGCATTTATAAAAGCTAACAAGCTTCGGCCATCAATGGGGACTGATTACTTCTGATTGCCTTTTTGTTCCCCAGAGTCGATCCGCTTCATTTGACGCAGAAATTATTACA_-_ATGAAGATTTTCAATAATCCCCTGCTGTTTGCAGTGTGGGTGCTATCTATGGTTTCCGCAGCATTATCTTGTGACCGCTGCCTTCACAAATCCAAAGTCTCCTCTTTCGCTCGGGCTAATATTAATGGCGCATGTGGATATGGGGACTCTGCAACAAGCTTAACTGCTCGTGGAGGGCTGGTCATGGCAAGCGCAAGTGCCAAAATATACAGAGAAGGCGTAGGATGCGGCGCCTGCTATCAGATGAGATGCACAGATCCAGGCGTTTGCACCAAATCTGGAGTGAAAGTTTTGGTTACAGACTTCACAAAAAGCACTGAGACAGATTTTGTTCTTTCCGCTGGCAGTTTCTCGAAACTGGCGGTAGCTAGCAAAGCTGCTCAATTTCTCAAGATGGGAACTGTGGATATAGACTATAAACGAATCCCCTGTGATTATGGAAGCCAAAACATGACTGTGAAAGTAGACACAAGCAGTAAATATCCAGACTACGAGGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGCCGTTGACATTGACTGGGTGGGATCATCAGATTGGCAGTATATGACCCACAAAAACGGTGCAATTTGGGGAATGCAGAATCCTCGCAGAGGTTCCCTGTCGTTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACAAGAAATTTACTGCCCGCAATCTGGAGGCCGGGCTCTGTTTATGAATCTGGAGTTCAGATCACAGAAATTGCGCAAGAAGGCTGTAGTCCCTGCGAAACTGGCAACTGGACTGACACACGCATACGTTAA___TTAATTGTGATAATCCACAGTGGAGTAGAGTAATTGTTTGAGGCATAGGACCGAGAGTTATTTCTAATTGGCGAGCATAGTCAAAAAGGCAGTGAGATGTTTATATCTTATATTTTCTCAGATAAATATAT

Fln Alignment:

AllPine_a_rep_c120278___MKIFNN--PLLFAVWVLSMVSAALSCDRCLHKSKVSSFARANINGACGYGDSATSLTARGGLVMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTDFTKSTETDFVLSAGSFSKLAVASKAAQFLKMGTVDIDYKRIPCDYGSQNMTVKVDTSSKYPDYEAVQFLYQGGQTDITAVDIDWVGSSDWQYMTHKNGAIWGMQNPRRGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIAQEGCSPCETGNWTDTRI
A9NMA2________________MKILHKIQQLRFAIWMLFMVSAALSCDRCLHKSKVASDARANINGACGYGTSATSLTTRGGLVTASASAKIYREGVGCGACYQIRCTDPGVCSKSGVKVLVTDFTKNTQTDFVLSARSFSRLAVPSKAAQFLKMGTVDVDYKRIPCEYGGQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITAVEVDQVGSSGWQYMTRNQGAIWGMQNPPRGYLSFRLLVTGGYDGSWVWPRRNLLPSIWTPGSVYESGIQITEIAQEGCSPCETGNWTDTYV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
373		66		33	1.0
388		16		83	0.994512
482		75		25	0.996473
504	75		25		0.996473
574			80	20	0.995493
591		80		20	0.995493
601		16		83	0.994512
603	50		33		1.0
605	66	16			0.988813
607			16	83	0.994512
614	50		50		1.0
620	25		75		0.99649
928	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain