SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146436

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene146436
CGTCGTGACCTTGGCTGTCACTCATGATCCTCAATATTGCCACTGTTGTTGCAGGAGCAGTCACCAATCCCTTTACCACCGGCTACTTCCAAGGCGACGCAAGTGCACCGCTAGAGGCCGTGTCGGCGTGCACGGGAATATTTGGAAAGGGGGCATATCTGGGGTTCCCTGGGGTGCTTCTGGTGGATAAAACAACTGGTGCAAGCTACAATGCCCATGGAATTAATGGGCGAGAGTTTCTGTTGCCTGCGATGTGGGATCCAGCAACCAGGTCTTGCAAAGAATTGGTATAACCAGTTTTTGGCGCTTGTCATACTTCTTAATCCTTCATTCAAACAGTGAAGGAGGAAGCGGCCGTGAACACATCTGGACACCAGCAACACAGCATCAATTATGCTGATAGATGCTTGTTTGTATATATATTCTTTATTCTTTAATAGTTATTCATGGATTACATACATCTGGAATAGATCAGCATTATTCTTTT

Ace file of the UniGene sp_v3.0_unigene146436

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	6.0e-29	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Putative phi-1	-	-	8.787e-22	-

Source	Gene names
Sma3	AT4g08950; At1g35140; At4g08950; At4g08950/T3H13.3; At5g09440; At5g09440/T5E8_240; At5g64260; EXO; GSVIVT00006171001; GSVIVT00015200001; GSVIVT00015201001; GSVIVT00015203001; GSVIVT00015204001; GSVIVT00015212001; GSVIVT00015213001; GSVIVT00028047001; LOC_

Source	GOs	Term	Type	e value	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	3.0e-36	65%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	4.0e-36	65%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	2.94273e-44	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 97 - 358

Fln protein: S*PWLSLMILNIATVVAGAVTNPFTTGYFQGDASAPLEAVSACTGIFGKGAYLGFPGVLLVDKTTGASYNAHGINGREFLLPAMWDPATRSCKELV*

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATCCTCAATATTGCCACTGTTGTTGCAGGAGCAGTCACCAATCCCTTTACCACCGGCTACTTCCAAGGCGACGCAAGTGCACCGCTAGAGGCCGTGTCGGCGTGCACGGGAATATTTGGAAAGGGGGCATATCTGGGGTTCCCTGGGGTGCTTCTGGTGGATAAAACAACTGGTGCAAGCTACAATGCCCATGGAATTAATGGGCGAGAGTTTCTGTTGCCTGCGATGTGGGATCCAGCAACCAGGTCTTGCAAAGAATTGGTATAA___CCAGTTTTTGGCGCTTGTCATACTTCTTAATCCTTCATTCAAACAGTGAAGGAGGAAGCGGCCGTGAACACATCTGGACACCAGCAACACAGCATCAATTATGCTGATAGATGCTTGTTTGTATATATATTCTTTATTCTTTAATAGTTATTCATGGATTACATACATCTGGAATAGATCAGCATTATTCTTTT

Fln Alignment:

AllPine_a_rep_c120232___MILNIATVVAGAVTNPFTTGYFQGDASAPLEAVSACTGIFGKGAYLGFPGVLLVDKTTGASYNAHGINGREFLLPAMWDPATRSCKELV
A9NUB5________________MIINIATVLAGAATNPFNTGYFQGDAAAPLEAVSACPGIYGKGSYPGFPGELQVDKTTGASYNAHGVNGREFLLPAMWDPATRSCKTLI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
141		33		66	0.997464
142	66		33		0.997464
144	33	33		33	0.997752
145			33	66	0.997467
146			66	33	0.997471
149	66	33			0.997476
150	66	33			0.997476
152			66	33	0.997476
155		33	66		0.997476
162	33	33		33	0.997752
163		33	66		0.997476
164	33		66		0.997476
202		33	33	33	0.997753
283	66		33		0.997454
285	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain