SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146414

Length: 436 nt

UniGene Fasta

>sp_v3.0_unigene146414
TTGATGTTTCGCTTTTAACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAGAAGGGGGTTTAAAAGAAGTTCAAGAAGGATATTAGTGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGACTTTTATTCAACAATTACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGG

Ace file of the UniGene sp_v3.0_unigene146414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSP70 (Fragment) n=1 Tax=Populus alba RepID=Q8GUW2_POPAL	-	-	3.0e-35	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Heat shock protein 70	-	-	4.557e-37	-

Source	Gene names
Sma3	At1g16030; At1g56410; At3g09440; At3g12580; At5g02490; At5g02500; At5g28540; At5g42020; BIP; BIP1; BIP2; BIP3; BIP4; BIP5; BIPE2; BIPE3; BLP4; BiP; BiPD; Bip; CHLREDRAFT_133650; CHLREDRAFT_133859; CHLREDRAFT_185673; EMB21; F11F8; F13N6.9; F3L24.33; F7G19.

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02500.1	HSC70-1, HSP70-1, AT-HSC70-1, HSC70 heat shock cognate protein 70-1 chr5:554055-556334 REVERSE LENGTH=651	9.00054e-42	87%
RefSeq	Arabidopsis thaliana	NP_001119156.1	heat shock 70kDa protein 1/8 [Arabidopsis thaliana]	6.00036e-42	87%
RefSeq	Populus trichocarpa	XP_002332589.1	predicted protein [Populus trichocarpa]	5.99756e-43	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 324 aas, your sequence is shorter than subject: 127 - 652

Fln protein: DVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQKGV*KKFKKDISGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITPSYVGFTDTERLIGDAAKNQVAMNPTIRQEED*

Protein Length: 128

Fln nts: TTGATGTTTCGCTTTTAACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAGAAGGGGGTTTAAAAGAAGTTCAAGAAGGATATTAGTGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGACTTTTATTCAACAATTACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGG

Fln Alignment:

AllPine_a_rep_c120176___DVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHXXXXXXXXXXXXDISGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTIT
B8LRY5________________DVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKK-DLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain