SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146413

Length: 463 nt

UniGene Fasta

>sp_v3.0_unigene146413
CGTCGTGACCTTGGCTGTCACTCAGGCAGGGGATTATCTACAGTATCTTGGAGAAAAAGGATGAGGCTAGCAAGCAGTTTGAGAAATACCGACAATTAGCTAAAGACTCTCCAGACCAGAATTTAGTTGACAATCTTATGTCAGCGAAATTAGCTGAGTCTTTTAAACATGATGGGCAGGAAAAGAATGAATCAGAAAACTTGCCTAAAGAGGATGAATTGTCAAAGTCTCTTGATCAATCCGATGCAGGTGGGGACACCTTATATACAGAGAACAAATCTGACAATTAATGAGACAAGTATCGCAGAAGAAAAAGGCTGGTCTGCTTATCTTTCTTTTGTCAACAAAATGTTGAGGTATGTCAAAAATGCGCACATTATGGGTGAGGAGTCTGGGGTCCATACATGGGCTGATGAAACGGCCACGCGCACTGTCCAGGGCACTGACTCGCAGAATTCCCAAC

Ace file of the UniGene sp_v3.0_unigene146413

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	9.0e-08	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Putative phi-1	-	-	4.357e-15	-

Source	Gene names
Sma3	At5g64260; GSVIVT00015200001; GSVIVT00015203001; GSVIVT00015204001; GSVIVT00015212001; Os02g0756200; Os02g0756600; Os02g0756800; Os06g0219900; Os06g0220000; OsI_08993; OsI_08994; OsI_08995; OsI_22187; OsJ_08445; OsJ_08446; OsJ_08447; OsJ_20618; OsJ_20619;

Source	GOs	Term	Type	e value	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Phosphate-induced protein 1	IPR006766	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	7.0e-11	84%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	9.0e-11	84%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	3.0e-11	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNA1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 96 - 459

Fln protein: S*PWLSLRQGIIYSILEKKDEASKQFEKYRQLAKDSPDQNLVDNLMSAKLAESFKHDGQEKNESENLPKEDELSKSLDQSDAGGDTLYTENKSDN*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCAGGGGATTATCTACAGTATCTTGGAGAAAAAGGATGAGGCTAGCAAGCAGTTTGAGAAATACCGACAATTAGCTAAAGACTCTCCAGACCAGAATTTAGTTGACAATCTTATGTCAGCGAAATTAGCTGAGTCTTTTAAACATGATGGGCAGGAAAAGAATGAATCAGAAAACTTGCCTAAAGAGGATGAATTGTCAAAGTCTCTTGATCAATCCGATGCAGGTGGGGACACCTTATATACAGAGAACAAATCTGACAATTAA___TGAGACAAGTATCGCAGAAGAAAAAGGCTGGTCTGCTTATCTTTCTTTTGTCAACAAAATGTTGAGGTATGTCAAAAATGCGCACATTATGGGTGAGGAGTCTGGGGTCCATACATGGGCTGATGAAACGGCCACGCGCACTGTCCAGGGCACTGACTCGCAGAATTCCCAAC

Fln Alignment:

AllPine_a_rep_c120172___QGIIYSILEKKDEASKQFEKYRQLAKDSPDQNLVDNLMSAKLAESFKHDGQEKNESENLPKEDELSKSLDQSDAGGDTLYTENKSDN
B8LNA1________________QGIIYSILEKKDEASKQFEKYRQLAKDFPDQNLLDNLMSAKIAEPFKHDGQETIEAENLPKEDDLSKPLDQSGAGGDTLYVESKSDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain