SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146404

Length: 467 nt

UniGene Fasta

>sp_v3.0_unigene146404
ATGGGGGTTAACAGTGGGCAACTTCGACTTCGATCAGGCAAGGCAAGGCAATGTGGGCAATGGCAGTGGCAGGTGCACGTTGCAGCAGCGTGGTCTCCTCTCTCTCCCTGGAAAAATCCGCATTCACAGCAGGAACGAGCGTGAAGGGGTTGGCTTCCCCACTCCTGAGGCCTCTCACCAACAAATATGGCGCAAATGTTGATGGGTACAGCCCCATTTACGGCACAAAAGATTGGTCTCCCACTGGTGATGTCTATGTGGGAGGTAAAACGGGCCTTCTGATCTGGGCAATCACATTTTCAGCCATTCTTCTGGGAGGAGCCCTTCTCGTCTACAATACCAGTGCGTTGTCCGGCTGAATAAATATATAATCATGCCTTGGATTTCTTTCTGTATTTGTCTATGTTTTGCAATTATAATATCACTTGTATTCCTCAACCAAATGGGTCTCTGTTTTTCCTGTCGTC

Ace file of the UniGene sp_v3.0_unigene146404

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem II 10 kDa polypeptide n=2 Tax=Zea mays RepID=B6SQV5_MAIZE	-	-	1.0e-21	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Photosystem II 10 kDa polypeptide, chloroplastic	-	-	6.346e-19	-

Source	Gene names
Sma3	At1g79040; GSVIVT00025803001; OJ1470_H06.117; Os07g0147500; Os08g0200300; OsI_24891; OsI_24892; OsI_28175; OsJ_23088; OsJ_23089; OsJ_26372; P0022E03.15; P0022E03.16; P0556A11.19; PHYPADRAFT_109512; PHYPADRAFT_162310; PHYPADRAFT_163305; PHYPADRAFT_163306;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	thylakoid membrane	GO:0042651	Cellular Component	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	0.0	-
Sma3	Photosystem II PsbR	IPR006814	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79040.1	PSBR photosystem II subunit R chr1:29736085-29736781 FORWARD LENGTH=140	6.0e-24	72%
RefSeq	Arabidopsis thaliana	NP_178025.1	photosystem II subunit R [Arabidopsis thaliana]	8.0e-24	72%
RefSeq	Populus trichocarpa	XP_002332205.1	predicted protein [Populus trichocarpa]	4.0e-28	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK29

Fln msg: your sequence is shorter than subject: 103 - 150

Fln protein: MWAMAVAGARCSSVVSSLSLEKSAFTAGTSVKGLASPLLRPLTNKYGANVDGYSPIYGTKDWSPTGDVYVGGKTGLLIWAITFSAILLGGALLVYNTSALSG*

Protein Length: 104

Fln nts: ATGGGGGTTAACAGTGGGCAACTTCGACTTCGATCAGGCAAGGCAAGGCA_-_ATGTGGGCAATGGCAGTGGCAGGTGCACGTTGCAGCAGCGTGGTCTCCTCTCTCTCCCTGGAAAAATCCGCATTCACAGCAGGAACGAGCGTGAAGGGGTTGGCTTCCCCACTCCTGAGGCCTCTCACCAACAAATATGGCGCAAATGTTGATGGGTACAGCCCCATTTACGGCACAAAAGATTGGTCTCCCACTGGTGATGTCTATGTGGGAGGTAAAACGGGCCTTCTGATCTGGGCAATCACATTTTCAGCCATTCTTCTGGGAGGAGCCCTTCTCGTCTACAATACCAGTGCGTTGTCCGGCTGA___ATAAATATATAATCATGCCTTGGATTTCTTTCTGTATTTGTCTATGTTTTGCAATTATAATATCACTTGTATTCCTCAACCAAATGGGTCTCTGTTTTTCCTGTCGTC

Fln Alignment:

AllPine_a_rep_c120149___AMAVAGARCXXXXXXXXXEKSAFTAGTSVKGLASPLLRP-------------------------------------------------LTNKYGANVDGYSPIYGTKDWSPTGDVYVGGKTGLLIWAITFSAILLGGALLVYNTSALSG
A9NK29________________AMAVAGAGCSSVVSSLSLEKSAFTAGTRVKGLPSPLLRPPTSSRSVKVVASGGKKIKVDEPLGPSGDLTFRNGVDAGGRKPKGKGVYQFTSKYGANVDGYSPIYDTKDWSPTGDVYVGGKTGLLIWAITFAAILGGGALLVYNTSALSG

SSRs (tot: 1)

Start position	End position	Sequence	Length
36	51	AGGCA AGGCA AGGCA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain