SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146283

Length: 359 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene146283
GACCAAGGGAGAGAGGAGTTACGTCAAGAAGTAACAGGTCTTGAACCTTCTCATTGCCTTCTCCGCTTAGAATAGCGGCCTGCACTGCAGCACCATAGGCAACAGCCTCATCGGGGTTAATGCTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTACATT

Ace file of the UniGene sp_v3.0_unigene146283 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein 70 n=3 Tax=Embryophyta RepID=C9WCK6_9MARC	-	-	1.0e-38	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Heat shock protein 70	-	-	0.0	-

Source	Gene names
Sma3	At1g16030; At1g56410; At3g09440; At3g12580; At5g02490; At5g02500; At5g09590; At5g28540; At5g42020; BIP; BIP1; BIP2; BIP3; BIP4; BIP5; BIP8; BIPE2; BIPE3; BLP4; BiP; Bip; CHLREDRAFT_133650; CHLREDRAFT_133859; CHLREDRAFT_137452; CHLREDRAFT_185673; F11F8; F1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12580.1	HSP70, ATHSP70 heat shock protein 70 chr3:3991487-3993689 REVERSE LENGTH=650	93%
RefSeq	Arabidopsis thaliana	NP_187864.1	heat shock protein 70-4 [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002332589.1	predicted protein [Populus trichocarpa]	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 158 aas, your sequence is shorter than subject: 119 - 652

Fln protein: TKGERSYVKK*QVLNLLIAFSA*NSGLHCSTIGNSLIGVNAVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVH

Protein Length: 120

Fln nts: GACCAAGGGAGAGAGGAGTTACGTCAAGAAGTAACAGGTCTTGAACCTTCTCATTGCCTTCTCCGCTTAGAATAGCGGCCTGCACTGCAGCACCATAGGCAACAGCCTCATCGGGGTTAATGCTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTACATT

Fln Alignment:

AllPine_a_rep_c119812___GVNAVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV
B8LRY5________________GVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain