SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146254

Length: 443 nt

UniGene Fasta

>sp_v3.0_unigene146254
ATGGGATACATTGAAGAGCGTTTCAACCATCATGGCAAAAACCAGCTACTCTTTGGCAACAATATTACTCATCATAATTCTGCTGGTTTATGCAGACGTCGCCATTACCACCAGCCAGAATGATATAGAGAACCACGGGGTAATAAGACTGGGCTCACAGTTAACCGTATTTCTCTTACCGCAGACAAATAATGAAAAATTCAGTCCACGGCCCCATATTGATTGTGTTTCTCTGTGCAAGCATAGATGTTCCAAGGCATCGGAGGCCCAAGATCTGTACGAAGGGCTGTGAAATATGCTGTGCAAAATGCAAATGCGTACCTTATGGGAGCATTAAAGATGCGTGTCCCTGCTATAGCAATTGGAAAACTACCGGTGGCAAACACAAATGCCCCTGATCATTGAAATTTTGCTTTTACTATATTATATAAAGTTGATAATTA

Ace file of the UniGene sp_v3.0_unigene146254

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin-regulated protein 2 n=3 Tax=Andropogoneae RepID=B6SKV6_MAIZE	-	-	1.0e-11	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G74670.1	Gibberellin-regulated family protein chr1:28053378-28053893 FORWARD LENGTH=101	8.0e-12	56%
RefSeq	Arabidopsis thaliana	NP_177605.2	putative gibberellin-regulated protein [Arabidopsis thaliana]	1.0e-11	56%
RefSeq	Populus trichocarpa	XP_002327240.1	predicted protein [Populus trichocarpa]	1.0e-13	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 69 - 109

Fln protein: MKNSVHGPILIVFLCASIDVPRHRRPKICTKGCEICCAKCKCVPYGSIKDACPCYSNWKTTGGKHKCP*

Protein Length: 70

Fln nts: ATGGGATACATTGAAGAGCGTTTCAACCATCATGGCAAAAACCAGCTACTCTTTGGCAACAATATTACTCATCATAATTCTGCTGGTTTATGCAGACGTCGCCATTACCACCAGCCAGAATGATATAGAGAACCACGGGGTAATAAGACTGGGCTCACAGTTAACCGTATTTCTCTTACCGCAGACAAATA_-_ATGAAAAATTCAGTCCACGGCCCCATATTGATTGTGTTTCTCTGTGCAAGCATAGATGTTCCAAGGCATCGGAGGCCCAAGATCTGTACGAAGGGCTGTGAAATATGCTGTGCAAAATGCAAATGCGTACCTTATGGGAGCATTAAAGATGCGTGTCCCTGCTATAGCAATTGGAAAACTACCGGTGGCAAACACAAATGCCCCTGATCATTGAAATTTTGCTTTTACTATATTATATAAAGTTGATAATTA

Fln Alignment:

AllPine_a_rep_c119738___RPKICTKGCEICCAKCKCVPYGSI--KDACPCYSNWKTTGGKHKCP
A9NKH2________________RHKVCLRACGTCCAKCNCVPPGTSGNKDVCPCYASLKTHGNKPKCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain