SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146194

Length: 737 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene146194 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L3 Ribosomal protein n=1 Tax=Medicago sativa subsp. x varia RepID=Q9SBR8_MEDSV	-	-	4.0e-38	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Ribosomal protein L3	-	-	4.258e-17	-

Source	Gene names
Sma3	ARP1; ARP2; At1g43170; At1g61580; CHLREDRAFT_126189; EMB2207; GSVIVT00010223001; GSVIVT00031743001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os08g0116500; Os12g0167900; OsI_27602; OsI_35258; OsI_37606; OsJ_25823; OsJ_35352; Ot01g00490; P0470F10.11; P

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L3	IPR000597	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Ribosomal protein P2	IPR001859	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	84%
RefSeq	Arabidopsis thaliana	NP_001185148.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002302168.1	predicted protein [Populus trichocarpa]	80%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain