SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146043

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene146043
CAGAAGGCACCATCCAGATGAAGCTGTCAATAATGATTTCTTAGGAGAGCTCTCGAAAGAAGACTTGCATTCAGTAAGTAAGTTATAGCAGATTTAGTACTATTCCTGCTCTTCGCTGGTCACGAGACCTCAGCCTTAGCGATGGTATTTTCTATCAAATTTCTCACGGACTGTCCCAAGGCACTTCACGAACTGAAGGCGGAGCACGGCACTCTGTTAAAGAGAAAGGGGAGTCCAAGGAACCAAAAACTCACCTGGGATGAACTAACCAAGTACAAATAGAAAATTTA

Ace file of the UniGene sp_v3.0_unigene146043 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	8.0e-22	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	4.618e-06	-

Source	Gene names
Sma3	CYP720B1; CYP720B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50660.1	DWF4, CYP90B1, CLM, SNP2, SAV1, PSC1 Cytochrome P450 superfamily protein chr3:18814262-18817168 REVERSE LENGTH=513	2.0e-12	47%
RefSeq	Arabidopsis thaliana	NP_190635.1	cytochrome P450 90B1 [Arabidopsis thaliana]	2.0e-12	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR04

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 142 aas, your sequence is shorter than subject: 94 - 486

Fln protein: QKAPSR*SCQ**FLRRALERRLAFSK*VIADLVLFLLFAGHETSALAMVFSIKFLTDCPKALHELKAEHGTLLKRKGSPRNQKLTWDELTKYK*

Protein Length: 95

Fln nts: CAGAAGGCACCATCCAGATGAAGCTGTCAATAATGATTTCTTAGGAGAGCTCTCGAAAGAAGACTTGCATTCAGTAAGTAAGTTATAGCAGATTTAGTACTATTCCTGCTCTTCGCTGGTCACGAGACCTCAGCCTTAGCGATGGTATTTTCTATCAAATTTCTCACGGACTGTCCCAAGGCACTTCACGAACTGAAGGCGGAGCACGGCACTCTGTTAAAGAGAAAGGGGAGTCCAAGGAACCAAAAACTCACCTGGGATGAACTAACCAAGTACAAATAGAAAATTTA

Fln Alignment:

AllPine_a_rep_c119224___SK*VIADLVLFLLFAGHETSALAMVFSIKFLTDCPKALHELKAEHGTLLKRKGSPRNQKLTWDELTKYK
C0PR04________________SEEIIADFILFLLFAGHETSSRSMSFSIKFLTDCPKAYQELKAEHEDLLRRKGNLRNEKLTWDDYQSMK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
155	77		22		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain