SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene146028

Length: 969 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene146028

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH	-	-	0.0	91%
FL-Next	tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii.	-	-	0.0	100%
Sma3	Alpha tubulin	-	-	1.2e-26	-

Source	Gene names
Sma3	AT1; ATUB3; At1g04820; BYtuba; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g51600; LOC_Os11g14220; MtrDRAFT_AC170580g1v1; OSJNBa0013A09.14; OSJNBb0122C16.10; OSTLU_26788; OSTLU_33239; Os03g0726100

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14960.2	-	91%
RefSeq	Arabidopsis thaliana	NP_193232.1	tubulin alpha-6 chain [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002301128.1	tubulin alpha-1 chain, partial [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5ME66

Fln msg: Separated hits, possible frame ERROR between 136 and 181, and overlapping frame ERROR between 435 and 411, query STOP codon is far from subject stop. Distance to subject end: 23 aas, your sequence is shorter than subject: 302 - 451

Fln protein: EPTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRxxxxxxxxxxxxxxxxERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICRRSLDIERPTYTNLNRxxxxxxxxxxxALNVDVTEFQTNLVPYPRIHFMLSSYAPVISASAILAMENTWPVVLCTVEMSCPRMSMPLSQRLRQREPSSLLIGVPQDLNAESTTSLPPLSPEAISPRFREPCA*FPTRPVLQRCSRESIISSISCMPSEHLFIGMWAGYGRGQFSKRVRILLP*

Protein Length: 303

Fln nts: GGAGCCGACTTACCGTCAGCTTTTCCATCCTGAACAGCTTATCAGCGGCAAGGAAGATGCGGCCAACAACTTTGCCCGTGGTCATTACACCATTGGCAAGGAAATTGTGGACCTCTGCCTGGACCGTATTCGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTGTGTATCCATCACCACAGGTCTCAACTTCGGTCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTGTCCTCGATAATGAAGCTATTTACGATATTTGCCGTCGTTCTTTGGACATTGAACGTCCCACATACACAAATCTGAACCGACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCCTTGAATGTCGATGTAACGGAGTTCCAAACAAACTTGGTCCCGTATCCTCGAATCCACTTTATGCTTTCGTCATACGCCCCTGTTATCTCTGCAAGTGCGATCCTCGCCATGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTTCATTGGTATGTGGGCAGGGTATGGAAGAGGGCAGTTTTCGAAGCGCGTGAGGATCTTGCTGCCCTGA___GAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGAGGGAGAGGAAGGTGATGAGGGATACGAG

Fln Alignment:

AllPine_a_rep_c119188___TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKxxxxxxxxxxxxxxxERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSxxGHFFIDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA
Q5ME66________________TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKxxxxxxxxxxxxxxxERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSxxASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
524			33	66	0.997452
525			33	66	0.997452
528		66	33		0.997452
529			33	66	0.997452
537	33			66	0.997452
538	33		66		0.997452
539	33	66			0.997452
540	33		66		0.997452
541	66		33		0.997452
542			33	66	0.997452
547	33		66		0.997452
551		50		50	1.0
553	25		25		0.995533
556	75		25		0.996473
621	20			80	0.995493
622	20		80		0.995493
624		80	20		0.995493
625			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain