SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145990

Length: 1207 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene145990

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01762, Galactosyl_T, Galactosyltransferase	-	-	1.0e-29	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Beta-1,3-galactosyltransferase sqv-2, putative	-	-	1.5e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	6.877e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		6.877e-16	%
Sma3	N-Glycan biosynthesis	00510		6.877e-16	%
Sma3	Mucin type O-Glycan biosynthesis	00512		6.877e-16	%
Sma3	Various types of N-glycan biosynthesis	00513		6.877e-16	%
Sma3	Other types of O-glycan biosynthesis	00514		6.877e-16	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		6.877e-16	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		6.877e-16	%
Sma3	Lipopolysaccharide biosynthesis	00540		6.877e-16	%
Sma3	Peptidoglycan biosynthesis	00550		6.877e-16	%
Sma3	Glycerolipid metabolism	00561		6.877e-16	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		6.877e-16	%
Sma3	Sphingolipid metabolism	00600		6.877e-16	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		6.877e-16	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		6.877e-16	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		6.877e-16	%
Sma3	Carotenoid biosynthesis	00906		6.877e-16	%
Sma3	Zeatin biosynthesis	00908		6.877e-16	%
Sma3	Flavonoid biosynthesis	00941		6.877e-16	%
Sma3	Anthocyanin biosynthesis	00942		6.877e-16	%
Sma3	Flavone and flavonol biosynthesis	00944		6.877e-16	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		6.877e-16	%
Sma3	Betalain biosynthesis	00965		6.877e-16	%
Sma3	Biosynthesis of type II polyketide products	01057		6.877e-16	%
Sma3	Metabolic pathways	01100		6.877e-16	%
Sma3	Biosynthesis of secondary metabolites	01110		6.877e-16	%
Sma3	Galactosylxylosylprotein 3-beta-galactosyltransferase.	EC:2.4.1.134	-	8.754e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	8.754e-25	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	8.754e-25	%
Sma3	Metabolic pathways	01100	8.754e-25	%

Source	Gene names
Sma3	At1g05170; At1g11730; At1g22015; At1g32930; At1g33430; At1g77810; At2g32430; At4g26940; B3GALT1; B3GALT2; B3GALT3; B3GALT4; B3GALT5; B3GALT6; B3GALT7; B3GALT8; F10C21.10; F10M23.280; F25C20.12; F28K19.2; F2E2.6; F9L11.10; GSVIVT00000488001; GSVIVT00002473

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	galactosyltransferase activity	GO:0008378	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	beta-1,3-galactosyltransferase activity	GO:0048531	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05170.2	-	64%
RefSeq	Arabidopsis thaliana	NP_172009.1	putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002306601.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE09

Fln msg: Distance to subject end: 138 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 200 - 335

Fln protein: RQAKSRKWRKQRYNGGIAKTHQAIQSLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGQGPEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGSKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDSEDAQHHDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIG

Protein Length: 201

Fln nts: GAGGGTTTTTCTCCGGTTTGGAATTTGACTAAAATAAAAGTGCGCCTAATTTGCCGTAAGAATGTATATAACTAATTCTTATTTTCAAATTTAGTCGGAGTATGGTTCGATGATTATTTTTGCGGCTATTAGCGCTGTAATCGGAGTTATTTTACACAATTTGTAATTTTTGGACTACTGTGCTAAAAGTCTGACTTTGGCGGCAATTGTATGAAGACTGCCTTTTGACAGCAGAATGAGTTGAAATGCAAATACTTTCATCGATTGCACTGAAAACTGGATGATGAACATTTGGAACCGGTGATTTTCAATTTTGACAGGTTTTGGGAGAGAGACAGGGGCAAACCGACAAGAAAACGGGCTTAGGCTTAGGCTTAGGCTCGTTGGCAGGGGAAAGTTTGGAGTGGCCTTCTGAAGAAAACGAAAAAAAAATGCGGGGCAGATCTTCCGGGGGTTCGTTTTCCCCCAAATTGATTGTGCTCCTCTGCGTTGCGAGTTTCTGCATCGGTATGCTCTTTACTAACAGAATGTGGAGCAATCCTGAGACGTACGATGACGTTGATCCCACGCACAAACGGGAATTGCAAGTTCTTTCTCAAGATTGTGAAGACAAGCAAAAAGTCGAAAATGGCGAAAGCAGAGATATAATGGGGGAATTGCCAAGACACATCAGGCCATTCAATCGTTGGACAAAACAATTTCTTCTCTTGAAATGGAATTAGCAGTTGCTCGGACTGCAAAATCAGCCAACCTCAATGGGTCACCTGTTCTTGAGAAGCCTGATGGACAAGGCCCTGAGGTACGCCAGAAGGCATTTGTTGTGATTGGAATCAATACAGCTTTTAGCAGTAGAAAGCGGCGGGACTCTGTTCGAGAAACCTGGATGCCACAAGGATCCAAACTGAAGCAGTTGGAGGAGAAGAAAGGCATTGTTATTAGATTTGTTATTGGACACAGTGTTACACCTGGTGGTATTTTGGATCGTGCCATTGATTCAGAAGATGCACAGCATCATGATTTCCTTAGATTGGAACATGTTGAAGGCTACCACGAGCTCTCAGCAAAGACCAAGACCTATTTTTCTACAGCAGTAGCAAAATGGGATGCAGATTTCTATGTTAAGGTCGATGATGATGTGCATGTTAATTTAGGGATGCTGGCCACCACTCTTGCACGATACCGATCTAAACCAAGAATTTACATTGGT

Fln Alignment:

AllPine_a_rep_c119079___SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGQGPEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGSKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDSEDAQHHDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIG
D5AE09________________SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGRGSEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGPKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDAEDAQHNDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRYRSKPRIYIG

SNPs (tot: 4)

Position	A %	G %	T %	Probability
655	33	66		0.997452
657	66	33		0.997452
659		33	66	0.997452
751	75	25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
360	381	GGCTTA GGCTTA GGCTTA GGCT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain