SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145988

Length: 1069 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene145988

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methionine synthase protein [Sorghum bicolor]	-	-	0.0	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Cobalamin-independent methionine synthase	-	-	8.063e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase.	EC:2.1.1.14	-	3.998e-38	-

Source	KEGGs	Term	e value	Identity
Sma3	Cysteine and methionine metabolism	00270	3.998e-38	%
Sma3	Selenocompound metabolism	00450	3.998e-38	%
Sma3	Biosynthesis of plant hormones	01070	3.998e-38	%
Sma3	Metabolic pathways	01100	3.998e-38	%
Sma3	Biosynthesis of secondary metabolites	01110	3.998e-38	%

Source	Gene names
Sma3	At1g22170; At1g78050/F28K19_30; At3g03780; At5g17920; At5g20980; BvMS1; CHLREDRAFT_154307; CIMS; GSVIVT00003836001; GSVIVT00004893001; GSVIVT00015262001; GSVIVT00017439001; GSVIVT00031893001; HvMS; LOC_Os12g42884; MET; METE; MPI7.9; MS1; MS2; MS3; MS4; MS

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	GO:0003871	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	methionine synthase activity	GO:0008705	Molecular Function	-
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	methionine biosynthetic process	GO:0009086	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22170.1	Phosphoglycerate mutase family protein chr1:7826603-7828055 FORWARD LENGTH=334	82%
RefSeq	Arabidopsis thaliana	NP_564161.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002301039.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
403	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain