SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145976

Length: 1367 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene145976

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH	-	-	0.0	46%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	35%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	1.226e-21	-

Source	Gene names
Sma3	AT4g02960; AT4g16870; At1g44510; At2g04820; At2g13940; At2g15650; AtRE2; AtRE2-1; B1003C08.12; B1110B01.4; F11I4_21; F14M2.5; H0112G12.6; H0512B01.8; LOC_Os03g05850; LOC_Os03g06540; LOC_Os03g20490; LOC_Os03g26290; LOC_Os03g30860; LOC_Os03g36684; LOC_Os10g

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	rRNA N-glycosylase activity	GO:0030598	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	negative regulation of translation	GO:0017148	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3		IPR010256	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 199 - 542

Fln protein: MFRHFHMEDCKPAPSPFQSGVKLSVSCTSPEVDATLYRQLVGKLLYLTHTRPDLSFAVGLVARFMKNPRESHWKAAKRILRYVRGTVQFGIHYSAEAPLLVGFTDSNWAGDPDDRKSTAGYVFTLGSGPITWACKKQAAISLSSAEAEYRGAVEASKEALWLRQILSEFGFEQRHPTTLWCDNQSAIQLCKDPVQHQR*

Protein Length: 200

Fln nts: AATGTTTCGTCATTTTCACATGGAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTCAAACTTTCAGTCTCTTGTACTTCTCCTGAAGTTGATGCTACCTTATACCGTCAACTTGTCGGAAAACTTTTGTATCTGACCCATACTCGTCCTGACCTTTCCTTTGCTGTTGGTCTTGTTGCTCGGTTTATGAAAAACCCCCGTGAAAGTCATTGGAAAGCAGCTAAAAGAATACTTCGTTATGTTCGAGGTACAGTTCAGTTTGGGATTCATTATAGTGCAGAAGCTCCTCTATTGGTTGGTTTCACTGATTCTAATTGGGCTGGTGACCCTGATGATCGGAAGTCTACTGCCGGTTATGTCTTCACTCTTGGTTCAGGACCTATTACATGGGCTTGTAAGAAACAGGCTGCCATTTCTCTTTCGTCAGCAGAAGCAGAGTATCGTGGTGCCGTGGAAGCTAGTAAGGAAGCCTTGTGGCTTCGTCAGATCCTATCAGAGTTTGGCTTTGAGCAGCGTCATCCGACTACACTTTGGTGTGATAATCAAAGTGCCATTCAGCTATGCAAAGATCCAGTCCAGCATCAGCGCTGA___AAACACATTGAACTACACATGCAATTCATCAGAAAGCTCATTCATGACCATGTTCTTGAAGTGCAATATTGTTCAACATATGATCAGGTTGCAGACATCTTCACAAAGGCTCTCACAGAGGTGAAGTTCACTAAACTTGGATATATGCTTGGATTTCAGGAAGTTGTCGCTAAGGGGGGATAGGCTCTAGTGCCTCCTTCCTTCTCTTATTGTGTCATATTTGTAAATCCTTCAATCCTATCCCAAGTTGTTCTTAAGGGGGGATGTTAGGATATTCCGACACATAGGAAATAGTTAAGTTCAACTTGGTCTAGTATAGAGTTAGGTATAGAGTTAGGTAAAGTGTGTTTCTTTACTGTTGTACATTTTGTAACTTACAATCCGACGGTCACGATATGTAGTGATCCGACGGTTCATTCTCTCCTCGGTATTACCGACACTTGATCCGTGGCTTGACACCCGATTGGTCCATGATTTCTATTTAAAGCGCATGGAGGGTCATTTGTAGGGTAATCCGTCTATGAGAGAAGCTTATGTAAATTTTCATTCTTTTATTAATAAATTGCCTGAAGTGGCCACGTTGGCTCAGGTCGTGGACTGTTTCTCTTTTTGAGGGTTTTAACCACGTCAAGAATACTGGTGTATTGATTTGTGATCTGTTTGTGAGCGGTGTCCTTTGGTGTTCTATCTAAGGAACCTACCCTATACAGTCCTACATATTTGTGGCACACAATATATTTCTCTGTGATTCATATAGTATACAATGGCT

Fln Alignment:

AllPine_a_rep_c119042___MFRHFHMEDCKPAPSPFQSGVKLS------VSCTSPEVDATLYRQLVGKLLY-LTHTRPDLSFAVGLVARFMKNPRESHWKAAKRILRYVRGTVQFGIHYSAEAPL-----LVGFTDSNWAGDPDDRKSTAGYVFTLGSGPITWACKKQAAISLSSAEAEYRGAVEASKEALWLRQILSEFGFEQRHPTTLWCDNQSAIQLCKDPVQHQR*KHIEL
Q9M5J7________________ILQRFNIHGSKPVKVPIPIGVNLSADQCPKIQEEEEDMSHVPYASAVGSLMYAMVCTRPDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQ-VVRLDCEIQSAIFMAKNPAYDSKTNHIDV

SNPs (tot: 5)

Position	A %	C %	T %	Probability
1154	33		66	0.997453
1155		33	66	0.997453
1190		66	33	0.997452
1194		33	66	0.997452
1204		33	66	0.997454

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain