SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145879

Length: 816 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene145879 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9SH66_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative beta-1,3-glucanase	-	-	8.447e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	5.321e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		5.321e-23	%

Source	Gene names
Sma3	AT3G13560; AT4g26830; At1g66250; At2g01630; At2g05790; At3g13560; At4g26830; At5g42100; At5g42720; B29; F10M23.170; GN1; GSVIVT00022223001; GSVIVT00025946001; GSVIVT00028303001; GSVIVT00030570001; GSVIVT00032980001; Glb3; Glu2; Gns9; MJC20.21; MtrDRAFT_AC

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell communication	GO:0007154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G05790.1	O-Glycosyl hydrolases family 17 protein chr2:2199450-2201293 FORWARD LENGTH=472	58%
RefSeq	Arabidopsis thaliana	NP_178637.2	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002320484.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPQ7

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 36 aas, your sequence is shorter than subject: 272 - 474

Fln protein: FGADRDCGGSGYRCLCWGWHCGYQLWSHSRQSSAGFQGSAALHAFSGTDIKITIALPNEQLSNVARRPSRAYAWVQKNVVGYVPGTQITAIAVGNEVFANSNNLTSYLVPAMKNIHMALVKYNLDGIIKVSSPLASSVLQNSFPPSTGLFKSDLVETTIKPMLDFLSQTGSSLMVNVYPFFAYEGDANDISLDYAxxxxxATSVQHHRSSGATPEGASETWCVANSKIDTSKLQAALDYACGEGAADCKQIQPGASCYNPNTLEAHASYAFN

Protein Length: 273

Fln nts: TTCGGTGCTGATCGCGATTGCGGTGGTTCTGGCTATCGTTGCCTCTGCTGGGGCTGGCACTGTGGGTATCAACTATGGTCGCATAGCAGACAATCTTCCGCCGGCTTCCAAGGTAGTGCAGCTCTCCATGCATTCAGTGGTACCGACATTAAAATCACCATTGCCCTTCCCAATGAGCAACTGTCCAACGTTGCTCGTCGTCCTTCGCGAGCCTATGCCTGGGTCCAGAAGAACGTTGTTGGCTACGTTCCGGGCACCCAGATCACGGCCATAGCTGTCGGCAATGAAGTCTTCGCCAATTCTAATAACCTCACCTCCTACCTTGTCCCTGCCATGAAGAATATTCACATGGCTCTCGTCAAATATAACCTCGACGGAATTATCAAGGTGTCGAGCCCCCTTGCCAGCAGTGTGCTCCAGAACTCTTTCCCACCATCAACCGGACTTTTCAAGAGCGACCTTGTGGAGACCACGATAAAGCCAATGCTCGATTTCCTGAGCCAAACGGGGTCCTCTCTCATGGTCAATGTTTACCCTTTCTTTGCCTACGAGGGCGACGCCAACGATATTTCTCTGGACTACGCAxxxxxxxxxxxxxxxGCCACCTCTGTGCAGCATCATCGCAGCAGCGGGGCAACCCCAGAAGGAGCATCCGAGACGTGGTGCGTTGCAAATTCCAAGATCGATACTAGTAAGCTCCAGGCGGCATTAGACTATGCATGTGGAGAAGGGGCTGCGGATTGCAAGCAGATTCAGCCCGGGGCGTCTTGCTACAACCCTAACACGCTCGAAGCCCATGCTTCATATGCTTTTAACAG

Fln Alignment:

AllPine_a_rep_c118804___AALHAFSGTDIKITIALPNEQLSNVARRPSRAYAWVQKNVVGYVPGTQITAIAVGNEVFANSNNLTSYLVPAMKNIHMALVKYNLDGIIKVSSPLASSVLQNSFPPSTGLFKSDLVETTIKPMLDFLSQTGSSLMVNVYPFFAYEGDANDISLDYALYNPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSTTPATSVQHHRSSGATPEGASETWCVANSKIDTSKLQAALDYACGEGAADCKQIQPGASCYNPNTLEAHASYAFN
C0PPQ7________________SALRAFSGTGVKITIALPNEQLFYVARRLSRAYAWVKQNVVAYVPGTQITAIAVGNEVFVNPNNITSYLVPAMTNLHRALVKYNLDGIVKISSPVALSALQSSYPASSGAFKNELVESTIKPMLDFLRQTGSYLMVNAYPFFAYKDNADVISLDYALFRPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSTPAVSAHHH-SSGTTPAGGSETWCVANSKSDTSKLQAALDYACGEGDADCQQIQPGAPCYNPNTLEAHASYAFN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain