SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145785

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene145785
AATGTGGAAGACTATGGTGATGGAGAAGGGTATGAAGCTATTTACGATATTTGCCGTCGTTCTTTGGACATTGAACGTCCCACATACACAAATCTGAACCGACTTGTCTCACAGGTCATTTCTTCATTGACCGCGTCCCTCCGTTTTGACGGTGCCTTGAATGTCGATGTAACGGAGTTCCAACAAACTTGGTCCCGTATCCTCGAATCCACTTTATGCTTTCGTCATAGCCCCTGTTATCTCTGCAGAAAAGGCCTACCATGAGCAGCTTTCTGTGGCAGAAATTACTAACAGTGCATTTGAGCCGTCCTCCATGATGGCCAAGTGCGATCCTCGCCACGGAAAACATGGCCTGTTGTCTTATGTACCGTGGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCG

Ace file of the UniGene sp_v3.0_unigene145785 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH	-	-	0.0	80%
FL-Next	tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii.	-	-	0.0	100%
Sma3	Alpha-tubulin	-	-	1.17e-17	-

Source	Gene names
Sma3	AT1; AT1G50010; AT5G19780; ATUB3; At1g04820; BYtuba; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g51600; LOC_Os11g14220; MtrDRAFT_AC170580g1v1; OSJNBa0013A09.14; OSJNBb0122C16.10; OSTLU_26788; OST

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14960.2	-	80%
RefSeq	Arabidopsis thaliana	NP_193232.1	tubulin alpha-6 chain [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002301128.1	tubulin alpha-1 chain, partial [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5ME66

Fln msg: Separated hits, possible frame ERROR between 183 and 230, Distance to subject end: 49 aas, your sequence is shorter than subject: 188 - 451

Fln protein: NVEDYGDGEGYEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFxxxxxxxxxxxxxxxxxAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKHGLLSYVPWRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK

Protein Length: 189

Fln nts: AATGTGGAAGACTATGGTGATGGAGAAGGGTATGAAGCTATTTACGATATTTGCCGTCGTTCTTTGGACATTGAACGTCCCACATACACAAATCTGAACCGACTTGTCTCACAGGTCATTTCTTCATTGACCGCGTCCCTCCGTTTTGACGGTGCCTTGAATGTCGATGTAACGGAGTTCCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCCCTGTTATCTCTGCAGAAAAGGCCTACCATGAGCAGCTTTCTGTGGCAGAAATTACTAACAGTGCATTTGAGCCGTCCTCCATGATGGCCAAGTGCGATCCTCGCCACGGAAAACATGGCCTGTTGTCTTATGTACCGTGGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCG

Fln Alignment:

AllPine_a_rep_c118565___EAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQxxxxxxxxxxxxxxxxAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKH------------------GLLSYVPWRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK
Q5ME66________________EAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQxxxxxxxxxxxxxxxxAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain