SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145781

Length: 1209 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene145781

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xyloglucan endotransglucosylase [Beta vulgaris subsp. vulgaris]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Xyloglucan endotransglycosylase	-	-	5.389e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At3g23730; At4g14130; At4g25810; At4g25820; At4g30270; At5g13870; At5g57530; At5g57540; At5g57550; At5g57560; EXGT-A4; EXGT-A5; EXT; F14M19.100; F14M19.90; FCAALL.173; GSVIVT00003361001; GSVIVT00003461001; GSVIVT00003478001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57560.1	TCH4, XTH22 Xyloglucan endotransglucosylase/hydrolase family protein chr5:23307296-23308235 REVERSE LENGTH=284	51%
RefSeq	Arabidopsis thaliana	NP_200564.1	xyloglucan endotransglucosylase/hydrolase protein 22 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002325067.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQJ9

Fln msg: Separated hits, possible frame ERROR between 157 and 283, and possible frame ERROR between 480 and 579, Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 315 - 275

Fln protein: NFN*DQIS*S*YSSLMTGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFSAATASSFDAAAEEAALESNQEQRLEWVRNNYMIYDYCGDTKRFPQGPPPECK*

Protein Length: 316

Fln nts: TAACTTCAACTAAGATCAGATCAGTTAATCTTAATATTCTTCTTTGATGACAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTATCATCTCAAGGTCCCAAACACGACGAAATAGATTTCGAATTTCTGGGCAACCTCTCTGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAACAACAATTCTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATCATGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTTTCTGTAGACGGGAGTCCTATTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAGAGCCAAGCAATGAGCGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGAGGTGGGCTTGTGAAGACCGATTGGACTAAAGCGCCTTTTGTTGCATCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAATAACTACATGATCTACGATTACTGTGGAGACACCAAAAGATTCCCACAGGGACCACCTCCCGAATGCAAATGAACCCTCAATTCAATTCCATTCCATTGAATTCAGAGAATGAATTCTTCTGGATACCTGACCCTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTTCAGGCACACAGAAAAAGAAACTTTCAATTATTCTTTCCTATTACATCTATTCTTTCATTCTTTGTCAGAAACACACAAACAGAAACGCATGTAACACAATCAATTCTTTTTGGGTACTGGTAATACAAAATCGAGCTCGAGATTCTTTTGATGATTC

Fln Alignment:

AllPine_a_rep_c118552___TGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIMYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFXXXXXXXXXXXXXXXXXXXXXXQRLEWVRNNYMIYDYCGDTKRFPQGPPPECK
A9NQJ9________________SGCGFQSKAEYLFAKIDMQIKLVPGNSAGTVTAYYLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSVDGTPVRVFKKREKELGEVDNNYHYPKSQAMRIYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF---NAAISSSNFAEEALDSNQEQKLQWVRNNYMIYDYCADTKRFPQGPPPECK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
901	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain