SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145769

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene145769
CACTTGGAATGGTGCTCCAGTATGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGGCATGGTGCTTCTGTCTGCAGACACTCCCAGAGTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGAGGGGTGCTACAGTCTACAGACACTCCCAGACTCAGTGGGGAACCTGTTGGGCCTCCAAAGTCTTGACTTGAA

Ace file of the UniGene sp_v3.0_unigene145769

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat family protein	-	-	2.0e-10	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	1.0e-12	48%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	2.0e-12	48%
RefSeq	Populus trichocarpa	XP_002334784.1	predicted protein [Populus trichocarpa]	8.0e-15	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 29 aas, your sequence is shorter than subject: 74 - 1071

Fln protein: HLEWCSSMQTLPDSVGNLSGLQSLHLAWCFCLQTLPESVGNLSGLQSLxxxGCYSLQTLPDSVGNLLGLQSLDL

Protein Length: 75

Fln nts: CACTTGGAATGGTGCTCCAGTATGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGGCATGGTGCTTCTGTCTGCAGACACTCCCAGAGTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTxxxxxxxxxGGGTGCTACAGTCTACAGACACTCCCAGACTCAGTGGGGAACCTGTTGGGCCTCCAAAGTCTTGACTTGAA

Fln Alignment:

AllPine_a_rep_c118514___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C0PQE2________________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain