SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145726

Length: 572 nt

UniGene Fasta

>sp_v3.0_unigene145726
TTTCTGCAGTTCAAAATGGAAGCGAGAATGCTGTGGATTGCTCTTCTTACATCAAATTGTGGGAATGGGCCACTGTTGATAAGACAGGAGGTTTTCAATCTGGGAAATGGCATCTTGATTAGGAAGGAAGCTCAACGAGTAGATCTTGGTGGAGACATGCCAGAATCAGTTCCAAGGCTTTCAAGAGTGAATCAGAAAATTACTGAAGGTCTGTGGAAAATGTTAAATATTGTACCCCGCTTATCTGATGCCCCTTTGGAGAAATATCTAGATTCCAATGATGTTTGCTCTAAAATTCATGTGTGTGAACTTGCTACACGGGACGCTGGAAAAATTGATGACCTGAATGGGCAGTCAATTATTAAGTTGCCATCATCAGAGTCTTCAGCACATGCACATTCAAAGTGAACTTGCTCTTGCCCTGATGCAAGTTTAGCTTATATAGCATTGTGAATTCGAATATAGGTTCAAGGTACAGAGTAACTATTGTTCTTAAATCAAGATAATATATACTTCTATTGACCTGTTCATTTTGTCATTAGATATAATGCATAGTTTTGTCTTCAAGGAAT

Ace file of the UniGene sp_v3.0_unigene145726

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	4.0e-28	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin-like	IPR011001	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P228

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 105 aas, your sequence is shorter than subject: 131 - 326

Fln protein: MEARMLWIALLTSNCGNGPLLIRQEVFNLGNGILIRKEAQRVDLGGDMPESVPRLSRVNQKITEGLWKMLNIVPRLSDAPLEKYLDSNDVCSKIHVCELATRDAGKIDDLNGQSIIKLPSSESSAHAHSK*

Protein Length: 132

Fln nts: TTTCTGCAGTTCAAA_-_ATGGAAGCGAGAATGCTGTGGATTGCTCTTCTTACATCAAATTGTGGGAATGGGCCACTGTTGATAAGACAGGAGGTTTTCAATCTGGGAAATGGCATCTTGATTAGGAAGGAAGCTCAACGAGTAGATCTTGGTGGAGACATGCCAGAATCAGTTCCAAGGCTTTCAAGAGTGAATCAGAAAATTACTGAAGGTCTGTGGAAAATGTTAAATATTGTACCCCGCTTATCTGATGCCCCTTTGGAGAAATATCTAGATTCCAATGATGTTTGCTCTAAAATTCATGTGTGTGAACTTGCTACACGGGACGCTGGAAAAATTGATGACCTGAATGGGCAGTCAATTATTAAGTTGCCATCATCAGAGTCTTCAGCACATGCACATTCAAAGTGAACTTGCTCTTGCCCTGATGCAAGTTTAGCTTATATAGCATTGTGAATTCGAATATAGGTTCAAGGTACAGAGTAACTATTGTTCTTAAATCAAGATAATATATACTTCTATTGACCTGTTCATTTTGTCATTAGATATAATGCATAGTTTTGTCTTCAAGGAAT

Fln Alignment:

AllPine_a_rep_c118426___MEARMLWIALLT-----------------------------------SNCGNGPLLIRQEVFNLGNGILIRKEAQRVDLGGDMPESVPRLSRVNQKITEGLWKMLNIVPRLSDAPLEK
A9P228________________MEARMLWIALLVFLITWKNADARKIVIFEHSEIPVRGRFSLHFPSVQTNCGNGPLLIRQEVFNLANGILIREEAQRVVFGGDMPESVPRLSRVNQKLAEGLSKMLNIVPRLSEVPLEK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain