SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145459

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene145459
GTCAAAAGAAGGTTGTTCCTGAAGCCTGAAGGTATCAACAATGTCAACTACTTTTGACAAAAAGCAATTTCTGGCATTTATTAAGCGATACATTAAGAATCTTAATACCAAATTGTCAGAAGAACGACAGGCCGAATTTAAGAAAAACGTGGAAGCAGCTGCCAAATGGCTGGTTTCTAAGTTGAGCGACCTCCAATTTTTTGTCGGAGAGAGCATGCATGATGATGGCTCTATGGTTTTTGCATACTACAAGGAAGGGGCTGCTGATCCGACATTTTTGTACTTCGCTGATGGCTTGAAGGAGGTC

Ace file of the UniGene sp_v3.0_unigene145459

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Translationally-controlled tumor protein homolog n=4 Tax=Pinaceae RepID=TCTP_PSEMZ	-	-	8.0e-38	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Translationally-controlled tumor protein homolog	-	-	0.0	-

Source	Gene names
Sma3	At3g05540; At3g16640; F18C1.20; GSVIVT00019752001; GSVIVT00022381001; GSVIVT00022720001; MGL6.10; Os11g0660500; OsI_36917; OsJ_34729; PHYPADRAFT_205346; PHYPADRAFT_71619; POPTRDRAFT_725698; POPTRDRAFT_828031; POPTRDRAFT_828728; PnTCTP; RCOM_0681260; RCOM_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	regulation of cell growth	GO:0001558	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	root hair cell tip growth	GO:0048768	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001983	-	-
Sma3	Mss4/translationally controlled tumour-associated TCTP	IPR011323	-	-
Sma3	Translationally controlled tumour protein, conserved site	IPR018103	-	-
Sma3	Translationally controlled tumour protein	IPR018105	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16640.1	TCTP translationally controlled tumor protein chr3:5669709-5670729 REVERSE LENGTH=168	5.0e-37	68%
RefSeq	Arabidopsis thaliana	NP_188286.1	translationally-controlled tumor protein-like protein [Arabidopsis thaliana]	7.0e-37	68%
RefSeq	Populus trichocarpa	XP_002314382.1	predicted protein [Populus trichocarpa]	2.0e-38	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPE8

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 102 - 167

Fln protein: SKEGCS*SLKVSTMSTTFDKKQFLAFIKRYIKNLNTKLSEERQAEFKKNVEAAAKWLVSKLSDLQFFVGESMHDDGSMVFAYYKEGAADPTFLYFADGLKEV

Protein Length: 103

Fln nts: GTCAAAAGAAGGTTGTTCCTGAAGCCTGAAGGTATCAACAATGTCAACTACTTTTGACAAAAAGCAATTTCTGGCATTTATTAAGCGATACATTAAGAATCTTAATACCAAATTGTCAGAAGAACGACAGGCCGAATTTAAGAAAAACGTGGAAGCAGCTGCCAAATGGCTGGTTTCTAAGTTGAGCGACCTCCAATTTTTTGTCGGAGAGAGCATGCATGATGATGGCTCTATGGTTTTTGCATACTACAAGGAAGGGGCTGCTGATCCGACATTTTTGTACTTCGCTGATGGCTTGAAGGAGGTC

Fln Alignment:

AllPine_a_rep_c117656___TFDKKQFLAFIKRYIKNLNTKLSEERQAEFKKNVEAAAKWLVSKLSDLQFFVGESMHDDGSMVFAYYKEGAADPTFLYFADGLKEV
A9NPE8________________SFDKKQFLAFIKRYIKNLATKLTEERQAEFKKNVEGAAKWLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
55			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain