SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145289

Length: 478 nt

UniGene Fasta

>sp_v3.0_unigene145289
CGTCGTGACCTTGGCTGTCACTCAAATTCGTATCAGAGCAGGAAAGATAAGAGCCGAACTGAGCTAGTTGTTGAATTTATATCCAAAGTTTTCACAGATAAAAAGTTTTTGTGTAATCGTCCCTTTTAACCTATGCTAAGTTGCAGGGTCTTGTTTTCCCCTACTTGTTGCTGTTCGGAGGGTTTCATTGTCGAACCGGACTCAACGGGCTCGAAAACTGGAGGGTTATTTGGCTCAGCTTTTTTGGCCAGAAGTTCGAACCCTGACGCCCTTACTGAGCAGGTATGCACAGGAGATCTAAGGGCCAGAAGTTCGAACCCTGACGCCCTTACTGAGCAGAGCATAAGTACAAGATTGTTAAACGATTGCATGCTAGAAAGCACATATGTGGAATGACCGGCGATAGTGTTAATGATGCCCCTGCCCCTGCGCTAAAGAAGGTAGACATAGAAATTGTTGTTGCTGATGCAAATGATGC

Ace file of the UniGene sp_v3.0_unigene145289

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	H+-transporting ATPase-like protein [Arabidopsis thaliana]	-	-	1.0e-12	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Plasma membrane H+-ATPase	-	-	1.631e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proton-exporting ATPase.	EC:3.6.3.6	-	1.068e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		1.068e-14	%

Source	Gene names
Sma3	AHA1; AHA10; AHA11; AHA2; AHA3; AHA4; AHA5; AHA6; AHA7; AHA8; AHA9; AT4G30190; ATP1; Aa_42640; At1g17260; At1g80660; At2g07560; At2g24520; At3g42640; At3g47950; At3g60330; At4g30190; At5g57350; At5g62670; BHA-1; Cr_42640; DcPA 1; DcPA 2; DcPA 3; DcPA 4; D

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	vacuole organization	GO:0007033	Biological Process	-
Sma3	vacuolar acidification	GO:0007035	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62670.1	AHA11, HA11 H(+)-ATPase 11 chr5:25159495-25164957 FORWARD LENGTH=956	3.0e-15	80%
RefSeq	Arabidopsis thaliana	NP_201073.1	H(+)-ATPase 11 [Arabidopsis thaliana]	4.0e-15	80%
RefSeq	Populus trichocarpa	XP_002318614.1	autoinhibited H+ ATPase, partial [Populus trichocarpa]	4.0e-15	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 337 aas, your sequence is shorter than subject: 158 - 955

Fln protein: S*PWLSLKFVSEQER*EPN*ASC*IYIQSFHR*KVFV*SSLLTYAKLQGLVFPYLLLFGGFHCRTGLNGLENWRVIWLSFFGQKFEP*RPY*AGMHRRSKGQKFEP*RPY*AEHKYKIVKRLHARKHICGMTGDSVNDAPAPALKKVDIEIVVADAND

Protein Length: 159

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCGTATCAGAGCAGGAAAGATAAGAGCCGAACTGAGCTAGTTGTTGAATTTATATCCAAAGTTTTCACAGATAAAAAGTTTTTGTGTAATCGTCCCTTTTAACCTATGCTAAGTTGCAGGGTCTTGTTTTCCCCTACTTGTTGCTGTTCGGAGGGTTTCATTGTCGAACCGGACTCAACGGGCTCGAAAACTGGAGGGTTATTTGGCTCAGCTTTTTTGGCCAGAAGTTCGAACCCTGACGCCCTTACTGAGCAGGTATGCACAGGAGATCTAAGGGCCAGAAGTTCGAACCCTGACGCCCTTACTGAGCAGAGCATAAGTACAAGATTGTTAAACGATTGCATGCTAGAAAGCACATATGTGGAATGACCGGCGATAGTGTTAATGATGCCCCTGCCCCTGCGCTAAAGAAGGTAGACATAGAAATTGTTGTTGCTGATGCAAATGATGC

Fln Alignment:

AllPine_a_rep_c117165___EHKYKIVKRLHARKHICGMTGDSVNDAPAPALKKVDIEIVVADAND
B8LQS1________________EHKYEIVRRLQEKKHICGMTGDGVND--APALKKADIGIAVADATD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
173			80	20	0.999996
201	10		90		0.90298
210			90	10	0.90298
216		10	90		0.90298
241	20		80		0.999996
242		60		40	1.0
249			90	10	0.902987
287		33		66	1.0
290			85	14	0.993533
354	80		20		0.995493
404	33		66		0.997476
411	66	33			0.997464
413		33		66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain