SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145225

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene145225
CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTTGATCGTTTAGGTGGAATTGTGGACCTCCGGCATGGGGTTTGGTGAGTTCAGGGGTCTCTAGCTGTATCTAGGGCCATAGGCGACTCACACATGAAACAATGGATAACGGCTGAACCAGAGACTAGAAATATTGAAATAACTTCTGATTGCGAG

Ace file of the UniGene sp_v3.0_unigene145225

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein phosphatase 2C [Medicago sativa]	-	-	2.0e-11	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	GSVIVT00024072001; GSVIVT00029318001; MP2C; VITISV_012222;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67820.1	Protein phosphatase 2C family protein chr1:25429882-25431484 FORWARD LENGTH=445	3.0e-14	55%
RefSeq	Arabidopsis thaliana	NP_176948.2	putative protein phosphatase 2C 14 [Arabidopsis thaliana]	5.0e-14	55%
RefSeq	Populus trichocarpa	XP_002311236.1	predicted protein [Populus trichocarpa]	4.0e-17	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 75 aas, your sequence is shorter than subject: 64 - 449

Fln protein: RRDLGCHSS*PWLDRLGGIVDLRHGVW*VQGSLAVSRAIGDSHMKQWITAEPETRNIEITSDCE

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTTGATCGTTTAGGTGGAATTGTGGACCTCCGGCATGGGGTTTGGTGAGTTCAGGGGTCTCTAGCTGTATCTAGGGCCATAGGCGACTCACACATGAAACAATGGATAACGGCTGAACCAGAGACTAGAAATATTGAAATAACTTCTGATTGCGAG

Fln Alignment:

AllPine_a_rep_c116974___LDRLGGIVDLRHGVW*VQGSLAVSRAIGDSHMKQWITAEPETRNIEITSDCE
B8LKN4________________IENLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWIIAEPDTRKIEITSDCE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain