SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145160

Length: 956 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene145160

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=2 Tax=Pinaceae RepID=Q43025_PINBN	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Alcohol dehydrogenase	-	-	4.833e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alcohol dehydrogenase.	EC:1.1.1.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		0.0	%
Sma3	Fatty acid metabolism	00071		0.0	%
Sma3	Glycine, serine and threonine metabolism	00260		0.0	%
Sma3	Tyrosine metabolism	00350		0.0	%
Sma3	Chloroalkane and chloroalkene degradation	00625		0.0	%
Sma3	Naphthalene degradation	00626		0.0	%
Sma3	Retinol metabolism	00830		0.0	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		0.0	%
Sma3	Drug metabolism - cytochrome P450	00982		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	1.943e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Methane metabolism	00680		1.943e-08	%

Source	Gene names
Sma3	ADH; ADH1; ADH2; ADH3; ADH6; Adh; Adh1; Adh2; Adh2d; Adh3; Adh4; AdhC1; AdhC2; AdhC3; AdhC4; AdhC5; AdhC6; AdhC7; At1g77120; F22K20.19; GSVIVT00014300001; GSVIVT00014303001; GSVIVT00034830001; GSVIVT00034832001; GSVIVT00034833001; GSVIVT00034834001; GV-AD

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77120.1	ADH1, ADH, ATADH, ATADH1 alcohol dehydrogenase 1 chr1:28975509-28977216 FORWARD LENGTH=379	70%
RefSeq	Arabidopsis thaliana	NP_177837.1	alcohol dehydrogenase class-P [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002328464.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR7

Fln msg: your sequence is shorter than subject: 285 - 464

Fln protein: PRIFGHEAAGVVESVGEGVTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGVPLKGSTVAIFGLGSVGLGAAEGARIAGASRIIGIDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLELDKFITHEVSFADINKSFDYMIKGESLRTVIKVSD*

Protein Length: 286

Fln nts: CCCCGCATCTTTGGACATGAAGCAGCTGGAGTTGTTGAAAGTGTTGGAGAAGGGGTAACTGACCTCAAGCCGGGTGACAGTGTGCTTCCTGTATTTACTGGAGAATGCAAGGAATGCAGACACTGCAAGTCAGAAGAGAGCAACATGTGTGATCTGCTAAGAATTAATACTGAGAGAGGGGTCATGATAAGTGATGGAAAGTCAAGGTTTTCCATCAATGGAAAGCCAATTTACCACTTCCTTGGTACATCGACTTTCAGCGAGTACACTGTTGTGCATGTGGGTGTGCCATTGAAGGGTTCGACAGTAGCAATATTCGGCCTCGGCAGTGTTGGGCTTGGTGCGGCCGAAGGCGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAATAGTGACAGATATGAACAAGCGAAACTATTTGGCGTAACGGAATTTATAAACCCTCAAGACTACGAAAAGCCTGTTCAAGAGGTAATCGCGGAAAAAACTAATGGAGGGGTGGACTGCAGCATCGAATGCACAGGAAATGTGAAGGCGATGATTCAAGCCTTCGAGTCCTGCCATGATGGTTGGGGTGTATCGGTTTTAGTGGGAGTCCCTCATTCAGATGCAGTTTTTGCAACCCATCCTATGAATTTCCTGAACGAGAGGACTCTGAAGGGAACTTTCTTTGGAAACTATAAGCCTCGTTCTGATTTGCCAGGCCTTGTAGAGATGTATCTGGATAAGAAACTTGAACTGGATAAATTTATTACTCATGAGGTCTCATTTGCTGATATCAACAAATCATTTGATTACATGATTAAAGGAGAGAGTCTGAGAACTGTGATTAAAGTGTCTGACTGA___TTACAAGGGAAAGCTAAAGTCACTTAAATATTAAGTGGCTGATTAAAGGGGAAAGTACGAGTATTGGCTTAATAACTGTGAGAAGTATGTACACAGACATT

Fln Alignment:

AllPine_a_rep_c116803___PRIFXXXXXXXXXXXXXXXTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGV--------------------------------PLKGSTVAIFGLGSVXXXXXXXXXXXXXXXXXXXDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLELDKFITHEVSFADINKSFDYMIKGESLRTVIKVSD
A9NWR7________________PRIFGHEAAGIVESVGEGVTDLKVGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSIDGKPVYHFLGTSTFSEYTVVHVGCVAKINPEAPLNKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVGLGAAEGARIAGASRIIGIDLNSDRYEQAKLFGVTEFINPKDHKKPVQEVIAERTNGGVDCSIECTGNVKAMVQAFESCHDGWGVSVLVGVPHADAVFSTNPVNFLNERTLRGTFFGNYKPRSDLPGLVEMYLNKELELDKFITHEVSFADINKAFDYMIKGESLRTVIKVSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain