SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145141

Length: 739 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene145141

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Sma3	Thaumatin-like protein	-	-	-

Source	Gene names
Sma3	AT1G20030; AT1G75800; AT4g36000; AT4g36010; AT4g38670; At1g18250; At1g19320; At1g20030; At1g73620; At1g73620/F25P22_3; At1g75030; At1g75040; At1g75050; At1g75800; At1g77700; At2g17860; At2g24810; At4g36000; At4g36010; At4g38670; At4g38670/F20M13_230; At5g

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	IgE binding	GO:0019863	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin D	IPR015451	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18250.2	-	5.0e-30	68%
RefSeq	Arabidopsis thaliana	NP_173261.1	Thaumatin-like protein [Arabidopsis thaliana]	6.0e-30	68%
RefSeq	Populus trichocarpa	XP_002317878.1	predicted protein [Populus trichocarpa]	3.0e-28	65%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
330	33		66		0.997452
451		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain