SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene145001

Length: 407 nt

UniGene Fasta

>sp_v3.0_unigene145001
CGTCGTGACCTTGGCTGTCACTCAAATTTCTGACAGTCCCAACGGTGGATCTTCATCTAGCAGCTATATGCGAGAGTGCTGTGCTAAATGTGGAATACCGTACTTTTGTTGAGATTGTGTTCCAGAACAATGAAGACACTGTCCAGTCATGGCATTTGGATGGATATTCCTTCTTTGTAGTGGGAATGGAGGGTGGTACATGGACACCTGCAAGTAGGAATGGATACAATCTCTTCGATGCAGTTTCTCGCTGCACAACCCAGGTTCCAAAAATCTGCACTCTGTTTTTATGTATAACATTCTTATAGCTGCTCAGATTGTATGATGGAAAATAAGTTTACAATATTAAATATGCCGATCTCTTAGTTTTATCGCCAGAGCCACTGCAGCTGATGAAATGTCTGTTG

Ace file of the UniGene sp_v3.0_unigene145001

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9R8I7_RICCO	-	-	7.0e-23	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Multicopper oxidase, putative	-	-	2.39e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	7.886e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		7.886e-20	%
Sma3	Metabolic pathways	01100		7.886e-20	%

Source	Gene names
Sma3	AT1G41830; AT1G76160; AT4G38420; AT4g22010; AT4g28090; AT4g38420; At1g21850; At1g21860; At1g41830; At1g55560; At1g55560/T5A14_2; At1g55570; At1g76160; At3g13390; At3g13400; At4g22010; At4g28090; At4g38420; At5g66920; Bp10; Bplo; F22I13.190; F5A13.5; F8K7.

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76160.1	sks5 SKU5 similar 5 chr1:28578211-28581020 REVERSE LENGTH=541	2.0e-27	70%
RefSeq	Arabidopsis thaliana	NP_177743.1	SKU5 similar 5 protein [Arabidopsis thaliana]	3.0e-27	70%
RefSeq	Populus trichocarpa	XP_002307765.1	predicted protein [Populus trichocarpa]	6.0e-28	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRP4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 22 aas, your sequence is shorter than subject: 102 - 542

Fln protein: S*PWLSLKFLTVPTVDLHLAAICESAVLNVEYRTFVEIVFQNNEDTVQSWHLDGYSFFVVGMEGGTWTPASRNGYNLFDAVSRCTTQVPKICTLFLCITFL*

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTCTGACAGTCCCAACGGTGGATCTTCATCTAGCAGCTATATGCGAGAGTGCTGTGCTAAATGTGGAATACCGTACTTTTGTTGAGATTGTGTTCCAGAACAATGAAGACACTGTCCAGTCATGGCATTTGGATGGATATTCCTTCTTTGTAGTGGGAATGGAGGGTGGTACATGGACACCTGCAAGTAGGAATGGATACAATCTCTTCGATGCAGTTTCTCGCTGCACAACCCAGGTTCCAAAAATCTGCACTCTGTTTTTATGTATAACATTCTTATAGCTGCTCAGATTGTATGATGGAAAATAAGTTTACAATATTAAATATGCCGATCTCTTAGTTTTATCGCCAGAGCCACTGCAGCTGATGAAATGTCTGTTG

Fln Alignment:

AllPine_a_rep_c116312___ESAVLNVEYRTFVEIVFQNNEDTVQSWHLDGYSFFVVGMEGGTWTPASRNGYNLFDAVSRCTTQV
B8LRP4________________QTAALSVEYRAFIEVVFQNYESTIQSWHLDGYSFFVVGMDGGDWTPANRKGYNLFDAVSRCTTQV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
194		33	66		0.997454
195		33	66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain