SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144982

Length: 1052 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene144982

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucoanthocyanidin dioxygenase n=1 Tax=Garcinia mangostana RepID=B9UZ53_9ROSI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Anthocyanidin synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Leucocyanidin oxygenase.	EC:1.14.11.19	-	9.187e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		9.187e-26	%
Sma3	Biosynthesis of phenylpropanoids	01061		9.187e-26	%
Sma3	Metabolic pathways	01100		9.187e-26	%
Sma3	Biosynthesis of secondary metabolites	01110		9.187e-26	%
Sma3	Flavonol synthase.	EC:1.14.11.23	-	1.293e-22	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		1.293e-22	%
Sma3	Biosynthesis of phenylpropanoids	01061		1.293e-22	%
Sma3	Metabolic pathways	01100		1.293e-22	%
Sma3	Biosynthesis of secondary metabolites	01110		1.293e-22	%
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	8.541e-13	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	8.541e-13	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.541e-13	%
Sma3	Metabolic pathways	01100	8.541e-13	%
Sma3	Biosynthesis of secondary metabolites	01110	8.541e-13	%

Source	Gene names
Sma3	A2; ANS; ANS-FL1; ANS1; ANS2; ANS3; ANT17; AT4G22880; At4g22880; B1039D07.24; B1045D11.2; CtANS6; EgANS; EgFLS; F7H19.60; FL; FLS; FLS1; FLS2; FLS3; FLS4; FLS5; FS; GSVIVT00001063001; GSVIVT00015342001; GSVIVT00015347001; GtANS; IhANS; IhANS2; KyLDOX1; LD

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	L-ascorbic acid binding	GO:0031418	Molecular Function	-
Sma3	flavonol synthase activity	GO:0045431	Molecular Function	-
Sma3	naringenin 3-dioxygenase activity	GO:0045486	Molecular Function	-
Sma3	leucocyanidin oxygenase activity	GO:0050589	Molecular Function	-
Sma3	vacuole organization	GO:0007033	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	anthocyanin biosynthetic process	GO:0009718	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22880.1	LDOX, TDS4, TT18, ANS leucoanthocyanidin dioxygenase chr4:12004905-12006059 REVERSE LENGTH=356	64%
RefSeq	Arabidopsis thaliana	NP_194019.1	leucoanthocyanidin dioxygenase [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002298081.1	anthocyanidin synthase [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMM4

Fln msg: Separated hits, possible frame ERROR between 539 and 581, and overlapping frame ERROR between 682 and 676, atg_distance in limit (1-15): atg_distance = 15, W2: There is no M at the beginning,

Fln protein: EKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPENRRDMTTWPKHPQEYIEVTDAYVREIRKLVTKMLRTLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLYKDGKWVTAKCIPGAILVHIGDQVEVPHESNFTLSFxxxxxxxxxxxxxxxQILSNGQFQSGLHRGLVNKEKVRISWAVFCxxxxxALIGPMKEVVDENNPPLFPAKTFQQHTDHKLFKKAQAQAEAEAAKKLNQST*

Protein Length: 281

Fln nts: GGGAGAAAGAGAAGTACGCGAATGACCACGCAGCGGGGAAGATAGCGGGGTACGGTTCCAAGCTCGCCAACAATGCCAGCGGTCAGCTTGAATGGGAGGACTATTATTTCCACCTGCTATGGCCTGAAAACCGCAGAGACATGACCACCTGGCCTAAACACCCCCAAGAATACATCGAGGTGACAGACGCCTACGTTCGGGAGATACGGAAACTGGTGACTAAGATGCTGAGAACGCTTTCGTTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGAGTGCTCGGCGGTGAAAATCTGGAAATGCAATTGAAAATAAATTACTATCCCCGCTGTCCACAACCGGAGCTCGCTCTCGGAGTGGAGGCACACACCGACATAAGCGCGCTCACATTTCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTACAAAGATGGCAAATGGGTCACCGCCAAATGCATTCCCGGCGCCATCCTCGTCCACATTGGTGACCAAGTCGAGGTACCCCATGAATCCAATTTCACTTTATCATTTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCAGATTTTGAGCAACGGGCAATTCCAGAGCGGACTGCACAGAGGGCTGGTGAATAAAGAGAAGGTGAGGATTTCATGGGCGGTGTTCTGCGAxxxxxxxxxxxxTGCCCTAATCGGACCCATGAAGGAAGTGGTGGACGAGAACAACCCTCCATTGTTTCCGGCGAAAACCTTCCAACAGCACACCGATCACAAGCTGTTCAAGAAGGCCCAAGCCCAGGCGGAGGCCGAGGCAGCCAAGAAACTGAACCAGTCTACTTAAATGCTGGGCAGGGCTACGACCTGAGACGTTACTGTTAGATGATACTTTCTGCTGGTGGGCTGTTGAAGTGCGACTTACTTTTTCCAGCGGCTGATAGAATTATTAGATTGTCAGATGTGTTAGTGCTTTTGAGATGCGTGGGATGTTTCTATTGCAGTGCAATGCTACTGTTCATATAATATTTTCTATCTAATAAATTACTAAAATTTTGC

Fln Alignment:

AllPine_a_rep_c116216___EKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPENRRDMTTWPKHPQEYIEVTDAYVREIRKLVTKMLRTLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLYKDGKWVTAKCIPGAILVHIGDQVEVPHESNFTLSFHxxxxxxxxxxxxxxQILSNGQFQSGLHRGLVNKEKVRISWAVFCDPxxNALIGPMKEVVDENNPPLFPAKTFQQHTDHKLFXXXXXXXXXXXXXXLNQST
A9NMM4________________EKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFTSGLHxxxxxxxxxxxxxxEILSNGKFTSGLHRGLVNKEKVRISWAVFCDPxxDALIGPMKEVVDESNPPLFPAKTFKEHTDHKLFKKAQAQAEAQAAKKLDQST

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
457		75	25		0.996473
485		20		80	0.995493
486		80		20	0.995493
799			83	16	0.994512
801		83		16	0.994512
1030		14		85	0.993533
1032	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain