SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144980

Length: 1161 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene144980 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	TPR domain protein	-	-	3.433e-08	-

Source	Gene names
Sma3	AT4g17940; AT4g32340; At1g80130; At4g17940; At4g32340; At5g20190; F10M6.30; F18B13.21; F8B4.40; GSVIVT00000340001; GSVIVT00015736001; GSVIVT00016915001; GSVIVT00020351001; H0306B06.7; LOC_Os03g04710; LOC_Os10g42610; OSIGBa0092E01.3; OSIGBa0157K09-H0214G12

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:6814093-6815171 FORWARD LENGTH=290	6.0e-35	52%
RefSeq	Arabidopsis thaliana	NP_197519.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	7.0e-35	52%
RefSeq	Populus trichocarpa	XP_002308981.1	predicted protein [Populus trichocarpa]	4.0e-38	67%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
426		88		11	0.923567
954	40		60		1.0
1002	40		60		1.0
1004	40	60			1.0
1005			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain